Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044270.1 | GLUTAMATE SEMIALDEHYDE DEHYDROGENASE |
| CAI8044272.1 | GAF/PUTATIVE CYTOSKELETAL PROTEIN |
| CAI8044273.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8044274.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| CAI8044275.1 | UNCHARACTERIZED |
| CAI8044277.1 | DEADENYLATION COMPLEX SUBUNIT PAN3 |
| CAI8044276.1 | DEADENYLATION COMPLEX SUBUNIT PAN3 |
| CAI8044279.1 | DEADENYLATION COMPLEX SUBUNIT PAN3 |
| CAI8044278.1 | DEADENYLATION COMPLEX SUBUNIT PAN3 |
| CAI8044280.1 | DEADENYLATION COMPLEX SUBUNIT PAN3 |
| CAI8044281.1 | ATP SYNTHASE GAMMA CHAIN |
| CAI8044282.1 | |
| CAI8044283.1 | |
| CAI8044284.1 | GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE |
| CAI8044285.1 | TRANSLATION MACHINERY-ASSOCIATED PROTEIN 7 |
| CAI8044286.1 | HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT |
| CAI8044287.1 | HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT |
| CAI8044288.1 | HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT |
| CAI8044294.1 | VACUOLAR PROTON ATPASES |
| CAI8044293.1 | VACUOLAR PROTON ATPASES |
| CAI8044291.1 | VACUOLAR PROTON ATPASES |
| CAI8044292.1 | VACUOLAR PROTON ATPASES |
| CAI8044290.1 | VACUOLAR PROTON ATPASES |
| CAI8044289.1 | VACUOLAR PROTON ATPASES |
| CAI8044295.1 | VACUOLAR PROTON ATPASES |
| CAI8044296.1 | |
| CAI8044298.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 22 |
| CAI8044297.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 22 |
| CAI8044299.1 | |
| CAI8044300.1 | |
| CAI8044301.1 | |
| CAI8044302.1 | |
| CAI8044303.1 | |
| CAI8044304.1 | |
| CAI8044306.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8044307.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8044308.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8044309.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8044310.1 | |
| CAI8044305.1 | |
| CAI8044311.1 | PROTEIN ABHD14B-LIKE |
| CAI8044312.1 | PROTEIN ABHD14B-LIKE |
| CAI8044313.1 | |
| CAI8044315.1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| CAI8044314.1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| CAI8044316.1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| CAI8044317.1 | NADH-UBIQUINONE OXIDOREDUCTASE ASHI SUBUNIT |
| CAI8044318.1 | |
| CAI8044319.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8044320.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
