Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044371.1 | |
| CAI8044372.1 | |
| CAI8044374.1 | |
| CAI8044373.1 | |
| CAI8044375.1 | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED |
| CAI8044377.1 | |
| CAI8044376.1 | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED |
| CAI8044378.1 | SPHINGOSINE KINASE |
| CAI8044379.1 | V-TYPE ATPASE ASSEMBLY FACTOR PKR1 |
| CAI8044380.1 | LIMKAIN B LKAP |
| CAI8044381.1 | LIMKAIN B LKAP |
| CAI8044382.1 | |
| CAI8044383.1 | |
| CAI8044384.1 | |
| CAI8044385.1 | VACUOLAR IMPORT AND DEGRADATION PROTEIN 24 |
| CAI8044386.1 | |
| CAI8044387.1 | |
| CAI8044388.1 | |
| CAI8044389.1 | |
| CAI8044390.1 | ENDO-ALPHA-1,2-MANNOSIDASE |
| CAI8044391.1 | |
| CAI8044392.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
| CAI8044393.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
| CAI8044394.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
| CAI8044397.1 | SPLICING FACTOR SF3A-RELATED |
| CAI8044398.1 | SPLICING FACTOR SF3A-RELATED |
| CAI8044399.1 | SPLICING FACTOR SF3A-RELATED |
| CAI8044396.1 | SPLICING FACTOR SF3A-RELATED |
| CAI8044395.1 | SPLICING FACTOR SF3A-RELATED |
| CAI8044400.1 | SPLICING FACTOR SF3A-RELATED |
| CAI8044401.1 | ACETYLORNITHINE DEACETYLASE |
| CAI8044402.1 | ACETYLORNITHINE DEACETYLASE |
| CAI8044403.1 | ALDEHYDE DEHYDROGENASE-RELATED |
| CAI8044404.1 | ALDEHYDE DEHYDROGENASE-RELATED |
| CAI8044405.1 | C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED |
| CAI8044406.1 | C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED |
| CAI8044407.1 | C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED |
| CAI8044408.1 | NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1 |
| CAI8044411.1 | RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN |
| CAI8044412.1 | RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN |
| CAI8044413.1 | RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN |
| CAI8044410.1 | RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN |
| CAI8044409.1 | RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN |
| CAI8044414.1 | RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN |
| CAI8044415.1 | RUN AND FYVE DOMAIN-CONTAINING PROTEIN 2-LIKE PROTEIN |
| CAI8044418.1 | |
| CAI8044417.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8044416.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8044421.1 | ZGC:172121 |
| CAI8044420.1 | ZGC:172121 |
