About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8044471.1PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
CAI8044472.1
CAI8044474.1
CAI8044473.1
CAI8044475.1
CAI8044476.1NUCLEOSIDE DIPHOSPHATE KINASE 6
CAI8044477.1
CAI8044478.1
CAI8044483.1CULLIN
CAI8044484.1CULLIN
CAI8044482.1CULLIN
CAI8044481.1CULLIN
CAI8044480.1CULLIN
CAI8044479.1CULLIN
CAI8044485.1CULLIN
CAI8044486.1CULLIN
CAI8044487.1CULLIN
CAI8044491.1TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR
CAI8044490.1TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR
CAI8044492.1TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR
CAI8044489.1TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR
CAI8044488.1TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR
CAI8044493.1
CAI8044494.1
CAI8044495.1
CAI8044496.1BASIGIN RELATED
CAI8044497.1PROTEIN SIDEKICK
CAI8044498.1VASCULAR CELL ADHESION MOLECULE 1
CAI8044499.1
CAI8044500.1RNA-BINDING MOTIF PROTEIN, X-LINKED 2
CAI8044501.1RNA-BINDING MOTIF PROTEIN, X-LINKED 2
CAI8044502.1PHOSPHOLIPID SCRAMBLASE-RELATED
CAI8044503.1PHOSPHOLIPID SCRAMBLASE-RELATED
CAI8044504.1
CAI8044505.1
CAI8044506.1
CAI8044507.1ADP-RIBOSYLGLYCOHYDROLASE
CAI8044508.1ADP-RIBOSYLGLYCOHYDROLASE
CAI8044515.1SOLUTE CARRIER FAMILY 35, MEMBER F5
CAI8044513.1SOLUTE CARRIER FAMILY 35, MEMBER F5
CAI8044514.1SOLUTE CARRIER FAMILY 35, MEMBER F5
CAI8044512.1SOLUTE CARRIER FAMILY 35, MEMBER F5
CAI8044511.1SOLUTE CARRIER FAMILY 35, MEMBER F5
CAI8044510.1
CAI8044509.1
CAI8044516.1SOLUTE CARRIER FAMILY 35, MEMBER F5
CAI8044517.1SOLUTE CARRIER FAMILY 35, MEMBER F5
CAI8044518.1SOLUTE CARRIER FAMILY 35, MEMBER F5
CAI8044519.1SOLUTE CARRIER FAMILY 35, MEMBER F5
CAI8044520.1
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