Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044567.1 | MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER |
| CAI8044566.1 | MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER |
| CAI8044573.1 | |
| CAI8044574.1 | |
| CAI8044575.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8044577.1 | TRANSAMIDASE |
| CAI8044576.1 | TRANSAMIDASE |
| CAI8044578.1 | UNCHARACTERIZED PROTEIN TLDD AND PMBA |
| CAI8044579.1 | HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN |
| CAI8044580.1 | ALCOHOL DEHYDROGENASE |
| CAI8044581.1 | ALCOHOL DEHYDROGENASE |
| CAI8044582.1 | |
| CAI8044583.1 | |
| CAI8044584.1 | - |
| CAI8044585.1 | |
| CAI8044589.1 | |
| CAI8044587.1 | |
| CAI8044588.1 | |
| CAI8044586.1 | |
| CAI8044590.1 | |
| CAI8044592.1 | |
| CAI8044591.1 | |
| CAI8044594.1 | TALIN |
| CAI8044593.1 | TALIN |
| CAI8044595.1 | TALIN |
| CAI8044596.1 | TALIN |
| CAI8044597.1 | |
| CAI8044598.1 | |
| CAI8044599.1 | CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB |
| CAI8044601.1 | CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB |
| CAI8044600.1 | |
| CAI8044603.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8044602.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8044605.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8044604.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8044606.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8044607.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8044608.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8044609.1 | RING FINGER PROTEIN 32 |
| CAI8044610.1 | |
| CAI8044611.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8044613.1 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| CAI8044612.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8044614.1 | |
| CAI8044615.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8044616.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8044617.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8044618.1 | APOPTOGENIC PROTEIN 1, MITOCHONDRIAL |
| CAI8044619.1 | APOPTOGENIC PROTEIN 1, MITOCHONDRIAL |
| CAI8044620.1 | - |
