Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044671.1 | |
| CAI8044678.1 | |
| CAI8044677.1 | |
| CAI8044672.1 | |
| CAI8044673.1 | |
| CAI8044675.1 | |
| CAI8044674.1 | |
| CAI8044676.1 | |
| CAI8044679.1 | |
| CAI8044681.1 | |
| CAI8044680.1 | |
| CAI8044682.1 | |
| CAI8044683.1 | |
| CAI8044684.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8044685.1 | |
| CAI8044686.1 | BONUS, ISOFORM C-RELATED |
| CAI8044687.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8044688.1 | LD44762P |
| CAI8044689.1 | LD44762P |
| CAI8044690.1 | LD44762P |
| CAI8044691.1 | LD44762P |
| CAI8044692.1 | LD44762P |
| CAI8044693.1 | STRAWBERRY NOTCH-RELATED |
| CAI8044694.1 | |
| CAI8044699.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8044696.1 | RIBONUCLEASE |
| CAI8044698.1 | RIBONUCLEASE |
| CAI8044700.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8044697.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8044695.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8044701.1 | RIBONUCLEASE |
| CAI8044702.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8044704.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER |
| CAI8044703.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER |
| CAI8044707.1 | MITOCHONDRIAL GENOME MAINTENANCE EXONUCLEASE 1 |
| CAI8044706.1 | MITOCHONDRIAL GENOME MAINTENANCE EXONUCLEASE 1 |
| CAI8044705.1 | MITOCHONDRIAL GENOME MAINTENANCE EXONUCLEASE 1 |
| CAI8044708.1 | MITOCHONDRIAL GENOME MAINTENANCE EXONUCLEASE 1 |
| CAI8044709.1 | |
| CAI8044710.1 | ARYLSULFATASE FAMILY MEMBER |
| CAI8044712.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI8044713.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI8044714.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI8044711.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI8044715.1 | |
| CAI8044717.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 |
| CAI8044718.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 |
| CAI8044716.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 |
| CAI8044719.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 |
| CAI8044721.1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 |
