Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044821.1 | |
| CAI8044822.1 | TWO-COMPONENT RESPONSE REGULATOR |
| CAI8044823.1 | |
| CAI8044824.1 | OS01G0149700 PROTEIN |
| CAI8044830.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8044831.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8044829.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8044828.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8044827.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8044826.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8044825.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8044832.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8044833.1 | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED |
| CAI8044837.1 | TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT |
| CAI8044836.1 | TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT |
| CAI8044835.1 | TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT |
| CAI8044838.1 | |
| CAI8044834.1 | TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT |
| CAI8044839.1 | HOMOACONITASE, MITOCHONDRIAL-RELATED |
| CAI8044840.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8044841.1 | |
| CAI8044842.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI8044843.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8044844.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8044845.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8044846.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8044847.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8044848.1 | KETOACID-COENZYME A TRANSFERASE |
| CAI8044849.1 | |
| CAI8044850.1 | GLYCOSYL TRANSFERASE |
| CAI8044851.1 | BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH |
| CAI8044854.1 | AMIDOPHOSPHORIBOSYLTRANSFERASE |
| CAI8044853.1 | AMIDOPHOSPHORIBOSYLTRANSFERASE |
| CAI8044852.1 | AMIDOPHOSPHORIBOSYLTRANSFERASE |
| CAI8044855.1 | |
| CAI8044856.1 | |
| CAI8044857.1 | |
| CAI8044858.1 | |
| CAI8044859.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S18B |
| CAI8044860.1 | |
| CAI8044861.1 | |
| CAI8044863.1 | BASIGIN RELATED |
| CAI8044862.1 | |
| CAI8044866.1 | |
| CAI8044865.1 | |
| CAI8044864.1 | |
| CAI8044871.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8044870.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8044868.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8044867.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
