Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8044621.1 | LEUCINE-RICH REPEAT-CONTAINING |
| CAI8044622.1 | LEUCINE-RICH REPEAT-CONTAINING |
| CAI8044623.1 | |
| CAI8044624.1 | ZYGIN |
| CAI8044625.1 | AMINOMETHYLTRANSFERASE |
| CAI8044626.1 | GLYCINE CLEAVAGE SYSTEM H PROTEIN |
| CAI8044627.1 | GLYCINE CLEAVAGE SYSTEM P-PROTEIN |
| CAI8044628.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI8044629.1 | |
| CAI8044630.1 | |
| CAI8044631.1 | |
| CAI8044632.1 | OXIDOREDUCTASE, ALDO/KETO REDUCTASE FAMILY PROTEIN |
| CAI8044633.1 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED |
| CAI8044634.1 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED |
| CAI8044635.1 | |
| CAI8044636.1 | DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED |
| CAI8044637.1 | |
| CAI8044638.1 | NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE-RELATED |
| CAI8044639.1 | NICOTINATE-NUCLEOTIDE ADENYLYLTRANSFERASE-RELATED |
| CAI8044640.1 | OROTATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8044641.1 | |
| CAI8044642.1 | |
| CAI8044643.1 | |
| CAI8044644.1 | |
| CAI8044645.1 | |
| CAI8044646.1 | |
| CAI8044647.1 | DYMECLIN |
| CAI8044648.1 | |
| CAI8044649.1 | |
| CAI8044650.1 | |
| CAI8044651.1 | |
| CAI8044652.1 | |
| CAI8044653.1 | |
| CAI8044654.1 | |
| CAI8044656.1 | |
| CAI8044655.1 | |
| CAI8044657.1 | |
| CAI8044658.1 | |
| CAI8044659.1 | |
| CAI8044660.1 | AIG1-TYPE G DOMAIN-CONTAINING PROTEIN |
| CAI8044661.1 | - |
| CAI8044662.1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
| CAI8044663.1 | ESSENTIAL MCU REGULATOR, MITOCHONDRIAL |
| CAI8044665.1 | MITOCHONDRIAL GLYCINE TRANSPORTER |
| CAI8044664.1 | MITOCHONDRIAL GLYCINE TRANSPORTER |
| CAI8044666.1 | MITOCHONDRIAL GLYCINE TRANSPORTER |
| CAI8044667.1 | MITOCHONDRIAL GLYCINE TRANSPORTER |
| CAI8044668.1 | MITOCHONDRIAL GLYCINE TRANSPORTER |
| CAI8044669.1 | UNCHARACTERIZED |
| CAI8044670.1 |
