Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045121.1 | CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN |
| CAI8045122.1 | ATP SYNTHASE |
| CAI8045123.1 | ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8045124.1 | ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC |
| CAI8045125.1 | ATP SYNTHASE SUBUNIT A, CHLOROPLASTIC |
| CAI8045126.1 | PROTEIN-EXPORT MEMBRANE PROTEIN SECG |
| CAI8045130.1 | TRIOSEPHOSPHATE ISOMERASE |
| CAI8045131.1 | TRIOSEPHOSPHATE ISOMERASE |
| CAI8045129.1 | TRIOSEPHOSPHATE ISOMERASE |
| CAI8045128.1 | TRIOSEPHOSPHATE ISOMERASE |
| CAI8045127.1 | TRIOSEPHOSPHATE ISOMERASE |
| CAI8045132.1 | HEMOLYSIN-RELATED |
| CAI8045133.1 | PROTEIN PHOH |
| CAI8045134.1 | |
| CAI8045135.1 | LPS-ASSEMBLY PROTEIN |
| CAI8045136.1 | UVRABC SYSTEM PROTEIN A |
| CAI8045137.1 | |
| CAI8045138.1 | DNA MISMATCH REPAIR PROTEINS MUTS FAMILY DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8045139.1 | |
| CAI8045140.1 | SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA |
| CAI8045141.1 | ANTIBIOTIC RESISTANCE PROTEIN MCBG |
| CAI8045142.1 | HYDROXYACYLGLUTATHIONE HYDROLASE GLOC |
| CAI8045143.1 | MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE |
| CAI8045144.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO |
| CAI8045147.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8045146.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8045145.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8045148.1 | UPF0718 PROTEIN YCGR |
| CAI8045149.1 | N-ACETYLMURAMOYL-L-ALANINE AMIDASE |
| CAI8045150.1 | SLL1193 PROTEIN |
| CAI8045151.1 | |
| CAI8045152.1 | 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 3 |
| CAI8045153.1 | NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE |
| CAI8045160.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8045159.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8045161.1 | |
| CAI8045156.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8045157.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8045155.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8045154.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8045158.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8045162.1 | BONUS, ISOFORM C-RELATED |
| CAI8045163.1 | |
| CAI8045164.1 | GABA-B RECEPTOR |
| CAI8045165.1 | |
| CAI8045166.1 | UBIQUITIN |
| CAI8045167.1 | |
| CAI8045169.1 | |
| CAI8045168.1 | |
| CAI8045170.1 | MUCIN 4-RELATED |
