Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045270.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8045272.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8045273.1 | |
| CAI8045274.1 | |
| CAI8045276.1 | CAAX PRENYL PROTEASE 1 |
| CAI8045275.1 | CAAX PRENYL PROTEASE 1 |
| CAI8045277.1 | CAAX PRENYL PROTEASE 1 |
| CAI8045278.1 | CAAX PRENYL PROTEASE 1 |
| CAI8045280.1 | UNCHARACTERIZED |
| CAI8045281.1 | UNCHARACTERIZED |
| CAI8045279.1 | |
| CAI8045283.1 | RIBOSOMAL PROTEIN S9 |
| CAI8045282.1 | RIBOSOMAL PROTEIN S9 |
| CAI8045284.1 | |
| CAI8045285.1 | |
| CAI8045286.1 | UPF0041 BRAIN PROTEIN 44-RELATED |
| CAI8045287.1 | PROFILIN |
| CAI8045291.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| CAI8045292.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| CAI8045290.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| CAI8045289.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| CAI8045288.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| CAI8045293.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| CAI8045295.1 | INHIBITOR OF APOPTOSIS |
| CAI8045294.1 | INHIBITOR OF APOPTOSIS |
| CAI8045296.1 | METAL TRANSPORTER CNNM |
| CAI8045297.1 | METAL TRANSPORTER CNNM |
| CAI8045299.1 | PROTEIN MMS22-LIKE |
| CAI8045300.1 | PROTEIN MMS22-LIKE |
| CAI8045298.1 | PROTEIN MMS22-LIKE |
| CAI8045304.1 | UNCHARACTERIZED |
| CAI8045302.1 | UNCHARACTERIZED |
| CAI8045301.1 | UNCHARACTERIZED |
| CAI8045303.1 | UNCHARACTERIZED |
| CAI8045306.1 | |
| CAI8045305.1 | |
| CAI8045307.1 | |
| CAI8045311.1 | SEC63 DOMAIN-CONTAINING |
| CAI8045310.1 | SEC63 DOMAIN-CONTAINING |
| CAI8045314.1 | SEC63 DOMAIN-CONTAINING |
| CAI8045315.1 | SEC63 DOMAIN-CONTAINING |
| CAI8045312.1 | SEC63 DOMAIN-CONTAINING |
| CAI8045316.1 | SEC63 DOMAIN-CONTAINING |
| CAI8045313.1 | SEC63 DOMAIN-CONTAINING |
| CAI8045309.1 | SEC63 DOMAIN-CONTAINING |
| CAI8045308.1 | SEC63 DOMAIN-CONTAINING |
| CAI8045317.1 | SEC63 DOMAIN-CONTAINING |
| CAI8045319.1 | UBX DOMAIN CONTAINING PROTEIN |
| CAI8045318.1 | UBX DOMAIN CONTAINING PROTEIN |
| CAI8045320.1 | UBX DOMAIN CONTAINING PROTEIN |
