Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045221.1 | |
| CAI8045222.1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
| CAI8045223.1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
| CAI8045224.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8045225.1 | OXIDOREDUCTASE FAD/NAD(P)-BINDING DOMAIN PROTEIN |
| CAI8045226.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8045230.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8045229.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8045228.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8045227.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8045231.1 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
| CAI8045234.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8045233.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8045232.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8045235.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8045236.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8045237.1 | |
| CAI8045238.1 | |
| CAI8045239.1 | |
| CAI8045240.1 | |
| CAI8045241.1 | |
| CAI8045242.1 | |
| CAI8045243.1 | |
| CAI8045245.1 | |
| CAI8045244.1 | |
| CAI8045246.1 | |
| CAI8045247.1 | |
| CAI8045248.1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| CAI8045251.1 | GABA-B RECEPTOR |
| CAI8045250.1 | GABA-B RECEPTOR |
| CAI8045249.1 | |
| CAI8045252.1 | |
| CAI8045254.1 | |
| CAI8045255.1 | |
| CAI8045253.1 | |
| CAI8045256.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8045258.1 | |
| CAI8045257.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8045259.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8045262.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8045261.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8045260.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8045263.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8045264.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8045265.1 | |
| CAI8045266.1 | VASCULAR CELL ADHESION MOLECULE 1 |
| CAI8045267.1 | BETA-LACTAMASE-RELATED |
| CAI8045268.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI8045271.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8045269.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
