Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045175.1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
| CAI8045174.1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
| CAI8045173.1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
| CAI8045176.1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
| CAI8045177.1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
| CAI8045178.1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
| CAI8045180.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8045181.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8045182.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8045179.1 | |
| CAI8045172.1 | |
| CAI8045171.1 | |
| CAI8045183.1 | |
| CAI8045184.1 | |
| CAI8045185.1 | RASSF |
| CAI8045186.1 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
| CAI8045187.1 | CYTOCHROME C OXIDASE, SUBUNIT II |
| CAI8045188.1 | CYTOCHROME C OXIDASE SUBUNIT 1 |
| CAI8045189.1 | |
| CAI8045190.1 | ELECTRON TRANSPORT PROTIN SCO1/SENC FAMILY MEMBER |
| CAI8045191.1 | 39S RIBOSOMAL PROTEIN L20 |
| CAI8045192.1 | TRANSLATION INITIATION FACTOR IF-3 |
| CAI8045193.1 | ATP-DEPENDENT PROTEASE LA (LON) DOMAIN PROTEIN |
| CAI8045194.1 | ZGC:162816-RELATED |
| CAI8045195.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8045196.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8045197.1 | - |
| CAI8045198.1 | |
| CAI8045199.1 | |
| CAI8045201.1 | |
| CAI8045200.1 | |
| CAI8045202.1 | |
| CAI8045204.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8045203.1 | NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 |
| CAI8045209.1 | |
| CAI8045207.1 | |
| CAI8045208.1 | |
| CAI8045206.1 | |
| CAI8045210.1 | |
| CAI8045205.1 | |
| CAI8045211.1 | |
| CAI8045213.1 | |
| CAI8045212.1 | |
| CAI8045214.1 | |
| CAI8045215.1 | TWO-COMPONENT RESPONSE REGULATOR |
| CAI8045216.1 | NITRATE/NITRITE SENSOR PROTEIN NARX-RELATED |
| CAI8045217.1 | SERINE / THREONINE RACEMASE FAMILY MEMBER |
| CAI8045218.1 | UNCHARACTERIZED |
| CAI8045219.1 | ARSENITE METHYLTRANSFERASE |
| CAI8045220.1 | PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE |
