Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045721.1 | ACETYL-COA C-ACETYLTRANSFERASE |
| CAI8045722.1 | BLR3430 PROTEIN |
| CAI8045723.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8045724.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8045725.1 | PYRUVATE KINASE |
| CAI8045726.1 | GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN |
| CAI8045727.1 | GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN |
| CAI8045731.1 | |
| CAI8045730.1 | |
| CAI8045729.1 | |
| CAI8045728.1 | |
| CAI8045732.1 | |
| CAI8045733.1 | 4-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER |
| CAI8045734.1 | ANKYRIN REPEAT PROTEIN |
| CAI8045735.1 | BLR4337 PROTEIN |
| CAI8045737.1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
| CAI8045736.1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
| CAI8045738.1 | S-METHYL-5'-THIOADENOSINE PHOSPHORYLASE |
| CAI8045739.1 | MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB |
| CAI8045740.1 | ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER |
| CAI8045741.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8045742.1 | TRANSAMIDASE |
| CAI8045743.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8045744.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8045745.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8045746.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8045747.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO |
| CAI8045748.1 | RIBONUCLEASE VAPC2 |
| CAI8045749.1 | TRANSAMIDASE |
| CAI8045753.1 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
| CAI8045752.1 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
| CAI8045751.1 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
| CAI8045750.1 | HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATED |
| CAI8045754.1 | |
| CAI8045755.1 | |
| CAI8045756.1 | CGTHBA PROTEIN -14 GENE PROTEIN |
| CAI8045757.1 | |
| CAI8045758.1 | |
| CAI8045759.1 | |
| CAI8045760.1 | SPRY DOMAIN CONTAINING SOCS BOX PROTEIN |
| CAI8045761.1 | |
| CAI8045762.1 | |
| CAI8045763.1 | |
| CAI8045764.1 | |
| CAI8045765.1 | |
| CAI8045768.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S22 |
| CAI8045767.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S22 |
| CAI8045766.1 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S22 |
| CAI8045769.1 | |
| CAI8045770.1 |
