Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045871.1 | MAJOR FACILITATOR SUPERFAMILY MULTIDRUG TRANSPORTER MFSC |
| CAI8045872.1 | MAJOR FACILITATOR SUPERFAMILY MULTIDRUG TRANSPORTER MFSC |
| CAI8045873.1 | |
| CAI8045875.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8045878.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8045876.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8045877.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8045874.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8045879.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8045880.1 | TRANSLATION ELONGATION FACTOR-RELATED |
| CAI8045881.1 | |
| CAI8045882.1 | |
| CAI8045883.1 | |
| CAI8045884.1 | |
| CAI8045885.1 | |
| CAI8045886.1 | |
| CAI8045887.1 | |
| CAI8045888.1 | MIDNOLIN |
| CAI8045889.1 | |
| CAI8045890.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8045891.1 | |
| CAI8045892.1 | |
| CAI8045893.1 | JITTERBUG, ISOFORM N |
| CAI8045894.1 | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE |
| CAI8045897.1 | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE |
| CAI8045895.1 | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE |
| CAI8045896.1 | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE |
| CAI8045898.1 | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE |
| CAI8045900.1 | TYROSINE-PROTEIN KINASE |
| CAI8045899.1 | TYROSINE-PROTEIN KINASE |
| CAI8045901.1 | TYROSINE-PROTEIN KINASE |
| CAI8045902.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8045903.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| CAI8045904.1 | COMM DOMAIN-CONTAINING PROTEIN 9 |
| CAI8045905.1 | COMM DOMAIN-CONTAINING PROTEIN 9 |
| CAI8045906.1 | KYNURENINASE |
| CAI8045907.1 | RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG |
| CAI8045908.1 | |
| CAI8045911.1 | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE |
| CAI8045910.1 | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE |
| CAI8045914.1 | LD09343P |
| CAI8045913.1 | LD09343P |
| CAI8045912.1 | LD09343P |
| CAI8045915.1 | LD09343P |
| CAI8045909.1 | |
| CAI8045916.1 | RETICULON-LIKE PROTEIN |
| CAI8045917.1 | RETICULON-LIKE PROTEIN |
| CAI8045918.1 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
| CAI8045919.1 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
| CAI8045920.1 | TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED |
