Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045921.1 | |
| CAI8045922.1 | 39S RIBOSOMAL PROTEIN L40, MITOCHONDRIAL |
| CAI8045923.1 | |
| CAI8045924.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8045925.1 | |
| CAI8045926.1 | BLUE CHEESE |
| CAI8045928.1 | BLUE CHEESE |
| CAI8045929.1 | BLUE CHEESE |
| CAI8045930.1 | BLUE CHEESE |
| CAI8045927.1 | |
| CAI8045932.1 | |
| CAI8045931.1 | |
| CAI8045935.1 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 |
| CAI8045936.1 | BASIGIN RELATED |
| CAI8045937.1 | PROTEIN SIDEKICK |
| CAI8045934.1 | CONTACTIN 5 |
| CAI8045933.1 | BASIGIN RELATED |
| CAI8045938.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8045940.1 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| CAI8045939.1 | |
| CAI8045942.1 | MUCIN 4-RELATED |
| CAI8045941.1 | MUCIN 4-RELATED |
| CAI8045944.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8045943.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8045945.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8045946.1 | |
| CAI8045947.1 | DNA2/NAM7 HELICASE FAMILY MEMBER |
| CAI8045948.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI8045949.1 | |
| CAI8045950.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8045951.1 | |
| CAI8045952.1 | ARCHEASE |
| CAI8045953.1 | |
| CAI8045958.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8045957.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8045956.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8045955.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8045954.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8045959.1 | 2-HACID_DH_C DOMAIN-CONTAINING PROTEIN |
| CAI8045960.1 | PROSTAGLANDIN REDUCTASE |
| CAI8045961.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI8045962.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| CAI8045963.1 | - |
| CAI8045964.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8045965.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI8045966.1 | 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED |
| CAI8045967.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI8045968.1 | SULFUR CARRIER PROTEIN SLR0821-RELATED |
| CAI8045969.1 | |
| CAI8045970.1 |
