Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045971.1 | PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED |
| CAI8045972.1 | RADICAL SAM DOMAIN PROTEIN |
| CAI8045973.1 | UNCHARACTERIZED |
| CAI8045974.1 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
| CAI8045975.1 | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I |
| CAI8045976.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8045977.1 | INNER MEMBRANE ABC TRANSPORTER |
| CAI8045978.1 | CADHERIN-87A |
| CAI8045979.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8045980.1 | |
| CAI8045985.1 | E3 UBIQUITIN-PROTEIN LIGASE TTC3 |
| CAI8045984.1 | E3 UBIQUITIN-PROTEIN LIGASE TTC3 |
| CAI8045983.1 | E3 UBIQUITIN-PROTEIN LIGASE TTC3 |
| CAI8045982.1 | E3 UBIQUITIN-PROTEIN LIGASE TTC3 |
| CAI8045981.1 | |
| CAI8045986.1 | |
| CAI8045987.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8045988.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8045989.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8045990.1 | EXSB FAMILY PROTEIN |
| CAI8045991.1 | MONOACYLGLYCEROL LIPASE |
| CAI8045992.1 | EPOXIDE HYDROLASE |
| CAI8045993.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8045994.1 | LEUCINE-RESPONSIVE REGULATORY PROTEIN |
| CAI8045995.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI8045996.1 | |
| CAI8045997.1 | |
| CAI8045998.1 | NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] |
| CAI8045999.1 | QUINOLINATE SYNTHETASE A |
| CAI8046000.1 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 |
| CAI8046001.1 | |
| CAI8046002.1 | |
| CAI8046003.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8046005.1 | - |
| CAI8046004.1 | - |
| CAI8046006.1 | SORTILIN RELATED |
| CAI8046014.1 | ALPHA-MANNOSIDASE |
| CAI8046013.1 | ALPHA-MANNOSIDASE |
| CAI8046011.1 | ALPHA-MANNOSIDASE |
| CAI8046012.1 | ALPHA-MANNOSIDASE |
| CAI8046009.1 | ALPHA-MANNOSIDASE |
| CAI8046010.1 | ALPHA-MANNOSIDASE |
| CAI8046008.1 | ALPHA-MANNOSIDASE |
| CAI8046007.1 | ALPHA-MANNOSIDASE |
| CAI8046015.1 | |
| CAI8046016.1 | |
| CAI8046017.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
| CAI8046018.1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
| CAI8046022.1 | |
| CAI8046019.1 |
