Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8046121.1 | |
| CAI8046127.1 | CORONIN |
| CAI8046125.1 | CORONIN |
| CAI8046123.1 | RAB GDP-DISSOCIATION INHIBITOR |
| CAI8046126.1 | CORONIN |
| CAI8046124.1 | RAB GDP-DISSOCIATION INHIBITOR |
| CAI8046122.1 | CORONIN |
| CAI8046130.1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
| CAI8046129.1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
| CAI8046128.1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
| CAI8046131.1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
| CAI8046132.1 | SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED |
| CAI8046134.1 | THROMBOXANE-A SYNTHASE |
| CAI8046133.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8046135.1 | THROMBOXANE-A SYNTHASE |
| CAI8046136.1 | |
| CAI8046137.1 | |
| CAI8046138.1 | TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1081 |
| CAI8046139.1 | TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1081 |
| CAI8046140.1 | |
| CAI8046141.1 | SULFATE TRANSPORTER YBAR-RELATED |
| CAI8046142.1 | |
| CAI8046143.1 | NNMT/PNMT/TEMT FAMILY MEMBER |
| CAI8046144.1 | GABA-B RECEPTOR |
| CAI8046145.1 | GABA-B RECEPTOR |
| CAI8046146.1 | |
| CAI8046147.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI8046152.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8046153.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8046151.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8046150.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8046149.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8046148.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8046154.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8046156.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8046155.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8046157.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8046158.1 | |
| CAI8046159.1 | |
| CAI8046160.1 | |
| CAI8046162.1 | |
| CAI8046161.1 | |
| CAI8046164.1 | |
| CAI8046163.1 | |
| CAI8046165.1 | |
| CAI8046166.1 | |
| CAI8046168.1 | |
| CAI8046169.1 | |
| CAI8046167.1 | |
| CAI8046170.1 |
