Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8046271.1 | |
| CAI8046272.1 | UDP-N-ACETYLGLUCOSAMINE--DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE |
| CAI8046276.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8046275.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8046274.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8046277.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8046278.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 13 |
| CAI8046279.1 | |
| CAI8046273.1 | |
| CAI8046280.1 | |
| CAI8046281.1 | |
| CAI8046282.1 | |
| CAI8046283.1 | GTPASE, IMAP FAMILY MEMBER-RELATED |
| CAI8046284.1 | |
| CAI8046288.1 | IMPORTIN ALPHA |
| CAI8046287.1 | IMPORTIN ALPHA |
| CAI8046286.1 | IMPORTIN ALPHA |
| CAI8046285.1 | IMPORTIN ALPHA |
| CAI8046289.1 | IMPORTIN ALPHA |
| CAI8046290.1 | IMPORTIN ALPHA |
| CAI8046292.1 | SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR |
| CAI8046291.1 | |
| CAI8046293.1 | RWD DOMAIN-CONTAINING PROTEIN |
| CAI8046294.1 | RWD DOMAIN-CONTAINING PROTEIN |
| CAI8046295.1 | WILMS' TUMOR 1-ASSOCIATING PROTEIN |
| CAI8046297.1 | T CELL-SPECIFIC ADAPTER PROTEIN TSAD |
| CAI8046298.1 | T CELL-SPECIFIC ADAPTER PROTEIN TSAD |
| CAI8046296.1 | T CELL-SPECIFIC ADAPTER PROTEIN TSAD |
| CAI8046299.1 | T CELL-SPECIFIC ADAPTER PROTEIN TSAD |
| CAI8046300.1 | T CELL-SPECIFIC ADAPTER PROTEIN TSAD |
| CAI8046301.1 | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
| CAI8046303.1 | CELL DIVISION PROTEIN KINASE |
| CAI8046302.1 | RIBOSOMAL PROTEIN S9 |
| CAI8046304.1 | |
| CAI8046305.1 | |
| CAI8046306.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8046307.1 | QUINOL MONOOXYGENASE YGIN-RELATED |
| CAI8046308.1 | |
| CAI8046309.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8046310.1 | |
| CAI8046311.1 | PEPTIDASE S12 |
| CAI8046312.1 | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL |
| CAI8046313.1 | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL |
| CAI8046314.1 | LYSINE/ARGININE/ORNITHINE TRANSPORT SYSTEM KINASE |
| CAI8046315.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8046316.1 | SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE |
| CAI8046317.1 | BCDNA.GH03377 |
| CAI8046318.1 | ENOYL-COA HYDRATASE |
| CAI8046319.1 | ANTITOXIN HIGA-1 |
| CAI8046324.1 | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 |
