Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8046323.1 | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 |
| CAI8046322.1 | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 |
| CAI8046321.1 | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 |
| CAI8046320.1 | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 |
| CAI8046325.1 | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED |
| CAI8046326.1 | |
| CAI8046327.1 | |
| CAI8046328.1 | UBIQUITIN |
| CAI8046329.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 |
| CAI8046330.1 | NADH DEHYDROGENASE |
| CAI8046331.1 | NAD KINASE |
| CAI8046332.1 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
| CAI8046333.1 | SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN |
| CAI8046334.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8046335.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI8046336.1 | ISOCITRATE DEHYDROGENASE [NADP] |
| CAI8046337.1 | ISOCITRATE DEHYDROGENASE [NADP] |
| CAI8046338.1 | ISOCITRATE DEHYDROGENASE [NADP] |
| CAI8046339.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
| CAI8046340.1 | THREONINE-TRNA LIGASE |
| CAI8046341.1 | THREONINE-TRNA LIGASE |
| CAI8046342.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8046343.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8046344.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8046345.1 | PEPTIDE CHAIN RELEASE FACTOR 2 |
| CAI8046346.1 | GTP CYCLOHYDROLASE II-RELATED |
| CAI8046347.1 | DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) |
| CAI8046348.1 | DCTP DEAMINASE |
| CAI8046349.1 | SLR1258 PROTEIN |
| CAI8046350.1 | |
| CAI8046351.1 | INTELECTIN |
| CAI8046352.1 | |
| CAI8046353.1 | |
| CAI8046354.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8046355.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8046356.1 | 50S/60S RIBOSOMAL PROTEIN L16 |
| CAI8046357.1 | 60S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29 |
| CAI8046358.1 | 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER |
| CAI8046359.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8046360.1 | 40S RIBOSOMAL PROTEIN S15A |
| CAI8046362.1 | 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL |
| CAI8046361.1 | 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL |
| CAI8046363.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8046364.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8046366.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8046365.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8046368.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8046367.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8046369.1 | SECY/SEC61-ALPHA FAMILY MEMBER |
| CAI8046370.1 | NUCLEOTIDE KINASE |
