Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045671.1 | |
| CAI8045672.1 | OS04G0629600 PROTEIN |
| CAI8045673.1 | |
| CAI8045677.1 | SYMPLEKIN-RELATED |
| CAI8045678.1 | SYMPLEKIN-RELATED |
| CAI8045676.1 | SYMPLEKIN-RELATED |
| CAI8045675.1 | |
| CAI8045674.1 | |
| CAI8045679.1 | SYMPLEKIN-RELATED |
| CAI8045682.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
| CAI8045681.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
| CAI8045680.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
| CAI8045683.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
| CAI8045684.1 | |
| CAI8045685.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8045686.1 | PROTEASOME SUBUNIT ALPHA/BETA |
| CAI8045687.1 | |
| CAI8045688.1 | |
| CAI8045689.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8045690.1 | |
| CAI8045691.1 | |
| CAI8045692.1 | TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED |
| CAI8045693.1 | TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED |
| CAI8045694.1 | TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED |
| CAI8045695.1 | TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED |
| CAI8045696.1 | TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED |
| CAI8045697.1 | TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED |
| CAI8045698.1 | TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED |
| CAI8045699.1 | TRANSMEMBRANE PROTEIN 9 FAMILY MEMBER |
| CAI8045700.1 | |
| CAI8045701.1 | - |
| CAI8045702.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 6 |
| CAI8045703.1 | PROTEIN O-MANNOSYL-TRANSFERASE TMTC2 |
| CAI8045704.1 | PEPTIDYLPROLYL ISOMERASE |
| CAI8045705.1 | ANTITOXIN HIGA-1 |
| CAI8045706.1 | ATP-DEPENDENT HELICASE HRQ1 |
| CAI8045707.1 | |
| CAI8045708.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8045709.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8045710.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI8045711.1 | |
| CAI8045712.1 | CADHERIN-23 |
| CAI8045713.1 | CADHERIN-23 |
| CAI8045714.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8045715.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8045719.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8045718.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8045717.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8045716.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8045720.1 | TRANSAMIDASE |
