Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8045521.1 | |
| CAI8045522.1 | TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED |
| CAI8045523.1 | NASOPHARYNGEAL EPITHELIUM SPECIFIC PROTEIN 1 |
| CAI8045524.1 | NASOPHARYNGEAL EPITHELIUM SPECIFIC PROTEIN 1 |
| CAI8045526.1 | |
| CAI8045525.1 | |
| CAI8045527.1 | |
| CAI8045529.1 | |
| CAI8045528.1 | |
| CAI8045533.1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| CAI8045532.1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| CAI8045531.1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| CAI8045530.1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| CAI8045534.1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
| CAI8045535.1 | |
| CAI8045537.1 | DYNEIN HEAVY CHAIN |
| CAI8045536.1 | DYNEIN HEAVY CHAIN |
| CAI8045538.1 | DYNEIN HEAVY CHAIN |
| CAI8045539.1 | |
| CAI8045540.1 | |
| CAI8045541.1 | |
| CAI8045542.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8045543.1 | |
| CAI8045544.1 | |
| CAI8045545.1 | |
| CAI8045546.1 | |
| CAI8045547.1 | |
| CAI8045548.1 | |
| CAI8045549.1 | |
| CAI8045550.1 | DIMETHYLANILINE MONOOXYGENASE |
| CAI8045554.1 | TRNA-DIHYDROURIDINE SYNTHASE |
| CAI8045553.1 | TRNA-DIHYDROURIDINE SYNTHASE |
| CAI8045552.1 | TRNA-DIHYDROURIDINE SYNTHASE |
| CAI8045551.1 | TRNA-DIHYDROURIDINE SYNTHASE |
| CAI8045555.1 | |
| CAI8045556.1 | DED DOMAIN-CONTAINING PROTEIN |
| CAI8045557.1 | CYTOCHROME B-245 CHAPERONE 1 |
| CAI8045558.1 | 30S RIBOSOMAL PROTEIN S18 |
| CAI8045559.1 | NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1 |
| CAI8045560.1 | |
| CAI8045561.1 | |
| CAI8045562.1 | RHO GTPASE-ACTIVATING PROTEIN 190 |
| CAI8045563.1 | |
| CAI8045564.1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| CAI8045565.1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| CAI8045567.1 | |
| CAI8045566.1 | |
| CAI8045568.1 | I_LWEQ DOMAIN-CONTAINING PROTEIN |
| CAI8045569.1 | PROTEIN SIDEKICK |
| CAI8045570.1 | PROTEIN SIDEKICK |
