Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8046520.1 | SI:CH211-266K2.1 |
| CAI8046522.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8046523.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8046524.1 | COLLAGEN ALPHA |
| CAI8046525.1 | |
| CAI8046526.1 | |
| CAI8046527.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 60 |
| CAI8046528.1 | |
| CAI8046529.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 60 |
| CAI8046531.1 | RB1-INDUCIBLE COILED-COIL |
| CAI8046530.1 | RB1-INDUCIBLE COILED-COIL |
| CAI8046532.1 | RB1-INDUCIBLE COILED-COIL |
| CAI8046533.1 | |
| CAI8046534.1 | |
| CAI8046535.1 | |
| CAI8046536.1 | ADHESION REGULATING MOLECULE 1 110 KDA CELL MEMBRANE GLYCOPROTEIN |
| CAI8046537.1 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
| CAI8046538.1 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
| CAI8046539.1 | |
| CAI8046540.1 | CHITIN-BINDING TYPE-4 DOMAIN-CONTAINING PROTEIN |
| CAI8046543.1 | DUAL SPECIFICITY PROTEIN KINASE |
| CAI8046542.1 | DUAL SPECIFICITY PROTEIN KINASE |
| CAI8046541.1 | |
| CAI8046544.1 | |
| CAI8046545.1 | |
| CAI8046546.1 | DUAL SPECIFICITY PROTEIN KINASE |
| CAI8046547.1 | |
| CAI8046548.1 | DUAL SPECIFICITY PROTEIN KINASE |
| CAI8046549.1 | |
| CAI8046550.1 | |
| CAI8046552.1 | SERINE PROTEASE-RELATED |
| CAI8046551.1 | SERINE PROTEASE-RELATED |
| CAI8046553.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8046555.1 | |
| CAI8046554.1 | |
| CAI8046556.1 | |
| CAI8046557.1 | |
| CAI8046558.1 | |
| CAI8046559.1 | |
| CAI8046560.1 | ADENYLATE CYCLASE TYPE 1 |
| CAI8046561.1 | |
| CAI8046562.1 | ADENYLATE CYCLASE TYPE 1 |
| CAI8046563.1 | ADENYLATE CYCLASE TYPE 1 |
| CAI8046564.1 | TRANSAMIDASE |
| CAI8046567.1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| CAI8046566.1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| CAI8046565.1 | |
| CAI8046568.1 | |
| CAI8046569.1 | |
| CAI8046570.1 |
