Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8046771.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8046772.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8046773.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8046774.1 | MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22/23 |
| CAI8046775.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B |
| CAI8046776.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B |
| CAI8046777.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B |
| CAI8046780.1 | EPIMERASE-RELATED |
| CAI8046778.1 | EPIMERASE-RELATED |
| CAI8046779.1 | EPIMERASE-RELATED |
| CAI8046782.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8046781.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8046783.1 | |
| CAI8046784.1 | AMMONIUM TRANSPORTER MEP2 |
| CAI8046785.1 | AMMONIUM TRANSPORTER MEP2 |
| CAI8046786.1 | ABC TRANSPORTER ATP-BINDING SUBUNIT |
| CAI8046788.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8046787.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8046789.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8046790.1 | SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM |
| CAI8046791.1 | |
| CAI8046792.1 | |
| CAI8046793.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8046794.1 | |
| CAI8046795.1 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED |
| CAI8046796.1 | |
| CAI8046797.1 | |
| CAI8046800.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8046799.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8046798.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8046801.1 | |
| CAI8046802.1 | |
| CAI8046803.1 | |
| CAI8046804.1 | |
| CAI8046805.1 | |
| CAI8046806.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| CAI8046807.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8046808.1 | ACYLPHOSPHATASE |
| CAI8046809.1 | ACYLPHOSPHATASE |
| CAI8046810.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 |
| CAI8046811.1 | TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 |
| CAI8046812.1 | CYTOCHROME C OXIDASE ASSEMBLY FACTOR 3, MITOCHONDRIAL |
| CAI8046814.1 | ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING |
| CAI8046815.1 | ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING |
| CAI8046813.1 | |
| CAI8046816.1 | |
| CAI8046818.1 | 26S PROTEASOME REGULATORY SUBUNIT |
| CAI8046817.1 | |
| CAI8046823.1 | 26S PROTEASOME REGULATORY SUBUNIT |
| CAI8046822.1 | 26S PROTEASOME REGULATORY SUBUNIT |
