Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8046821.1 | 26S PROTEASOME REGULATORY SUBUNIT |
| CAI8046820.1 | |
| CAI8046819.1 | |
| CAI8046824.1 | |
| CAI8046827.1 | LP07818P1 |
| CAI8046826.1 | |
| CAI8046825.1 | |
| CAI8046828.1 | |
| CAI8046829.1 | |
| CAI8046830.1 | |
| CAI8046831.1 | FATTY ACID ACYL TRANSFERASE-RELATED |
| CAI8046832.1 | FATTY ACID ACYL TRANSFERASE-RELATED |
| CAI8046833.1 | FATTY ACID ACYL TRANSFERASE-RELATED |
| CAI8046836.1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| CAI8046835.1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| CAI8046837.1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| CAI8046834.1 | |
| CAI8046838.1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| CAI8046839.1 | |
| CAI8046840.1 | |
| CAI8046841.1 | |
| CAI8046842.1 | |
| CAI8046843.1 | |
| CAI8046844.1 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| CAI8046845.1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
| CAI8046846.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8046847.1 | |
| CAI8046849.1 | |
| CAI8046848.1 | |
| CAI8046850.1 | VACUOLAR PROTON ATPASES |
| CAI8046851.1 | VACUOLAR PROTON ATPASES |
| CAI8046852.1 | BEN DOMAIN-CONTAINING PROTEIN 3 |
| CAI8046853.1 | BEN DOMAIN-CONTAINING PROTEIN 3 |
| CAI8046855.1 | |
| CAI8046854.1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
| CAI8046857.1 | |
| CAI8046856.1 | |
| CAI8046858.1 | |
| CAI8046859.1 | |
| CAI8046860.1 | |
| CAI8046861.1 | |
| CAI8046862.1 | |
| CAI8046863.1 | |
| CAI8046864.1 | |
| CAI8046865.1 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| CAI8046866.1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
| CAI8046867.1 | TUBULIN |
| CAI8046868.1 | TUBULIN |
| CAI8046869.1 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 3 |
| CAI8046870.1 | BNIP - RELATED |
