Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8046721.1 | BLEOMYCIN HYDROLASE |
| CAI8046722.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8046723.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8046724.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8046725.1 | |
| CAI8046726.1 | METALLOPHOSPHOESTERASE |
| CAI8046727.1 | NEPHRIN |
| CAI8046728.1 | PROTEIN-TYROSINE-PHOSPHATASE |
| CAI8046729.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8046730.1 | |
| CAI8046731.1 | |
| CAI8046732.1 | |
| CAI8046734.1 | CYTOKINE RECEPTOR |
| CAI8046733.1 | |
| CAI8046736.1 | |
| CAI8046735.1 | |
| CAI8046739.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8046741.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8046740.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8046737.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8046738.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8046742.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8046743.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8046745.1 | |
| CAI8046744.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8046746.1 | |
| CAI8046747.1 | |
| CAI8046748.1 | |
| CAI8046749.1 | |
| CAI8046750.1 | |
| CAI8046751.1 | |
| CAI8046752.1 | BLR5612 PROTEIN |
| CAI8046753.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8046754.1 | |
| CAI8046755.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8046756.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8046757.1 | F-BOX ONLY PROTEIN 22 |
| CAI8046758.1 | SLR1406 PROTEIN |
| CAI8046759.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8046761.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8046760.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI8046762.1 | ALCOHOL DEHYDROGENASE |
| CAI8046763.1 | |
| CAI8046764.1 | |
| CAI8046765.1 | PROTEIN SIDEKICK |
| CAI8046766.1 | |
| CAI8046767.1 | |
| CAI8046768.1 | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE SLYD |
| CAI8046769.1 | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE SLYD |
| CAI8046770.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
