Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047118.1 | |
| CAI8047117.1 | |
| CAI8047123.1 | |
| CAI8047124.1 | |
| CAI8047128.1 | HSDA/SDA1-RELATED |
| CAI8047127.1 | HSDA/SDA1-RELATED |
| CAI8047126.1 | HSDA/SDA1-RELATED |
| CAI8047125.1 | HSDA/SDA1-RELATED |
| CAI8047129.1 | HSDA/SDA1-RELATED |
| CAI8047130.1 | HSDA/SDA1-RELATED |
| CAI8047131.1 | HSDA/SDA1-RELATED |
| CAI8047133.1 | |
| CAI8047132.1 | |
| CAI8047134.1 | VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN |
| CAI8047135.1 | |
| CAI8047136.1 | |
| CAI8047138.1 | |
| CAI8047137.1 | |
| CAI8047140.1 | |
| CAI8047139.1 | |
| CAI8047141.1 | |
| CAI8047142.1 | PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE |
| CAI8047143.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8047144.1 | ASPARTATE AMINOTRANSFERASE |
| CAI8047145.1 | ISOCITRATE DEHYDROGENASE [NADP] |
| CAI8047146.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI8047147.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI8047148.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI8047149.1 | SUCCINYL-COA SYNTHETASE BETA CHAIN |
| CAI8047150.1 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| CAI8047151.1 | NUCLEOSIDE DIPHOSPHATE KINASE |
| CAI8047152.1 | DCTP DEAMINASE |
| CAI8047153.1 | DCTP DEAMINASE |
| CAI8047154.1 | NAD KINASE |
| CAI8047156.1 | FARNESYL DIPHOSPHATE SYNTHASE |
| CAI8047155.1 | FARNESYL DIPHOSPHATE SYNTHASE |
| CAI8047157.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8047158.1 | THIOL PEROXIDASE |
| CAI8047159.1 | AMINOTRANSFERASE |
| CAI8047160.1 | ADENOSYLHOMOCYSTEINASE |
| CAI8047161.1 | ABC TRANSPORT PROTEIN ATP-BINDING COMPONENT-RELATED |
| CAI8047162.1 | 30S RIBOSOMAL PROTEIN S20 |
| CAI8047163.1 | XANTHINE/URACIL PERMEASE C887.17-RELATED |
| CAI8047164.1 | ANTIPORTER SUBUNIT MNHG2-RELATED |
| CAI8047165.1 | PHAGE INTEGRASE-RELATED |
| CAI8047166.1 | SUA5 |
| CAI8047167.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER |
| CAI8047168.1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| CAI8047169.1 | BINDING PROTEIN TRANSPEPTIDASE, PUTATIVE-RELATED |
| CAI8047170.1 | SUGAR NUCLEOTIDE EPIMERASE RELATED |
