Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047171.1 | DC12-RELATED |
| CAI8047172.1 | POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED |
| CAI8047173.1 | PEPTIDASE M20 |
| CAI8047174.1 | OS05G0170800 PROTEIN |
| CAI8047175.1 | LIPOPROTEIN-RELEASING SYSTEM ATP-BINDING PROTEIN LOLD |
| CAI8047176.1 | DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED |
| CAI8047177.1 | NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1 |
| CAI8047178.1 | NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1 |
| CAI8047179.1 | NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1 |
| CAI8047180.1 | DED DOMAIN-CONTAINING PROTEIN |
| CAI8047181.1 | |
| CAI8047182.1 | |
| CAI8047183.1 | |
| CAI8047184.1 | |
| CAI8047185.1 | |
| CAI8047187.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047188.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047189.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047186.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047194.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047193.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047192.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047191.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047190.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047195.1 | SERINE PROTEASE |
| CAI8047199.1 | 5-OXOPROLINASE RELATED |
| CAI8047198.1 | 5-OXOPROLINASE RELATED |
| CAI8047196.1 | 5-OXOPROLINASE RELATED |
| CAI8047197.1 | 5-OXOPROLINASE RELATED |
| CAI8047200.1 | 5-OXOPROLINASE RELATED |
| CAI8047201.1 | 5-OXOPROLINASE RELATED |
| CAI8047202.1 | KIF1-BINDING PROTEIN |
| CAI8047203.1 | |
| CAI8047206.1 | RIBOSOME BIOGENESIS PROTEIN |
| CAI8047205.1 | RIBOSOME BIOGENESIS PROTEIN |
| CAI8047204.1 | RIBOSOME BIOGENESIS PROTEIN |
| CAI8047207.1 | E3 UBIQUITIN-PROTEIN LIGASE PPP1R11-RELATED |
| CAI8047209.1 | UNCHARACTERIZED |
| CAI8047208.1 | UNCHARACTERIZED |
| CAI8047210.1 | |
| CAI8047211.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8047212.1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| CAI8047213.1 | WD40 REPEAT PROTEIN |
| CAI8047214.1 | WD40 REPEAT PROTEIN |
| CAI8047215.1 | MEMBRANE PROTEIN-RELATED |
| CAI8047216.1 | MEMBRANE PROTEIN-RELATED |
| CAI8047217.1 | HOOK PROTEINS |
| CAI8047220.1 | BREAST CARCINOMA AMPLIFIED SEQUENCE 3 |
| CAI8047219.1 | BREAST CARCINOMA AMPLIFIED SEQUENCE 3 |
| CAI8047218.1 | BREAST CARCINOMA AMPLIFIED SEQUENCE 3 |
