Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047321.1 | |
| CAI8047322.1 | |
| CAI8047323.1 | AMINOMETHYLTRANSFERASE |
| CAI8047324.1 | |
| CAI8047325.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI8047326.1 | CYTOPLASMIC PROTEIN-RELATED |
| CAI8047327.1 | HOMOCYSTEINE/CYSTEINE SYNTHASE |
| CAI8047328.1 | |
| CAI8047329.1 | CYCLASE-LIKE PROTEIN 2 |
| CAI8047330.1 | COBW-RELATED |
| CAI8047331.1 | TRANSAMIDASE |
| CAI8047332.1 | PEROXYUREIDOACRYLATE/UREIDOACRYLATE AMIDOHYDROLASE-RELATED |
| CAI8047333.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8047334.1 | ALKANESULFONATE MONOOXYGENASE-RELATED |
| CAI8047335.1 | |
| CAI8047336.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8047337.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8047338.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8047339.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP38, CHLOROPLASTIC |
| CAI8047340.1 | MALTOSE-BINDING PERIPLASMIC PROTEIN |
| CAI8047341.1 | MALTOSE TRANSPORT SYSTEM PERMEASE-RELATED |
| CAI8047343.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8047342.1 | MALTODEXTRIN IMPORT ATP-BINDING PROTEIN MSMX |
| CAI8047344.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI8047345.1 | |
| CAI8047346.1 | SNF2/RAD54 FAMILY MEMBER |
| CAI8047347.1 | |
| CAI8047348.1 | |
| CAI8047349.1 | |
| CAI8047351.1 | SERINE/THREONINE-PROTEIN KINASE NEK |
| CAI8047350.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| CAI8047352.1 | |
| CAI8047354.1 | FAS-BINDING FACTOR 1 |
| CAI8047353.1 | |
| CAI8047355.1 | |
| CAI8047356.1 | UPF0193 PROTEIN EVG1 |
| CAI8047357.1 | UPF0193 PROTEIN EVG1 |
| CAI8047358.1 | ORF PROTEIN |
| CAI8047359.1 | WD-40 REPEAT PROTEIN |
| CAI8047360.1 | WD-40 REPEAT PROTEIN |
| CAI8047361.1 | WD-40 REPEAT PROTEIN |
| CAI8047362.1 | |
| CAI8047363.1 | |
| CAI8047364.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8047365.1 | |
| CAI8047366.1 | |
| CAI8047368.1 | |
| CAI8047367.1 | |
| CAI8047369.1 | |
| CAI8047371.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
