Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047370.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8047372.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8047373.1 | |
| CAI8047374.1 | |
| CAI8047375.1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| CAI8047376.1 | HISTONE PARYLATION FACTOR 1 |
| CAI8047377.1 | HISTONE PARYLATION FACTOR 1 |
| CAI8047378.1 | |
| CAI8047379.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8047380.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
| CAI8047381.1 | |
| CAI8047382.1 | |
| CAI8047383.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8047384.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8047385.1 | AMINOGLYCOSIDE N3-ACETYLTRANSFERASE |
| CAI8047387.1 | UPF0173 METAL-DEPENDENT HYDROLASE MJ1163-RELATED |
| CAI8047386.1 | UPF0173 METAL-DEPENDENT HYDROLASE MJ1163-RELATED |
| CAI8047388.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8047390.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8047389.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8047391.1 | IMPORT ATP-BINDING PROTEIN |
| CAI8047392.1 | OXIDOREDUCTASE-RELATED |
| CAI8047394.1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
| CAI8047393.1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
| CAI8047395.1 | DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE FAMILY MEMBER |
| CAI8047396.1 | |
| CAI8047397.1 | |
| CAI8047398.1 | SUGAR KINASE |
| CAI8047399.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI8047400.1 | |
| CAI8047401.1 | HYDROXYPYRUVATE ISOMERASE |
| CAI8047402.1 | ADENINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8047403.1 | ADENINE PHOSPHORIBOSYLTRANSFERASE |
| CAI8047404.1 | PROTEIN-EXPORT MEMBRANE PROTEIN SEC |
| CAI8047405.1 | PROTEIN-EXPORT MEMBRANE PROTEIN SEC |
| CAI8047406.1 | PROTEIN-EXPORT MEMBRANE PROTEIN SEC |
| CAI8047407.1 | TRANSCRIPTIONAL REGULATORY PROTEIN |
| CAI8047408.1 | |
| CAI8047409.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8047411.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8047410.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8047412.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8047418.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047416.1 | LYSYL OXIDASE-LIKE-RELATED |
| CAI8047415.1 | LYSYL OXIDASE-LIKE-RELATED |
| CAI8047417.1 | LYSYL OXIDASE-LIKE-RELATED |
| CAI8047414.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047413.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047419.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047421.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
