Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047521.1 | DNA POLYMERASE I |
| CAI8047522.1 | DNA POLYMERASE I |
| CAI8047523.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI8047524.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI8047525.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI8047526.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8047527.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8047528.1 | |
| CAI8047529.1 | |
| CAI8047530.1 | |
| CAI8047531.1 | |
| CAI8047532.1 | |
| CAI8047533.1 | |
| CAI8047534.1 | |
| CAI8047535.1 | SYNAPTOTAGMIN |
| CAI8047537.1 | THIOESTERASE SUPERFAMILY MEMBER-RELATED |
| CAI8047536.1 | THIOESTERASE SUPERFAMILY MEMBER-RELATED |
| CAI8047539.1 | ALDO/KETO REDUCTASE |
| CAI8047538.1 | 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE |
| CAI8047541.1 | ALDO/KETO REDUCTASE |
| CAI8047540.1 | 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE |
| CAI8047542.1 | |
| CAI8047543.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8047544.1 | ANKYRIN REPEAT PROTEIN |
| CAI8047545.1 | MYOTROPHIN |
| CAI8047546.1 | TAURINE IMPORT ATP-BINDING PROTEIN-RELATED |
| CAI8047547.1 | 50S RIBOSOMAL PROTEIN L31, CHLOROPLASTIC |
| CAI8047548.1 | 50S RIBOSOMAL PROTEIN L31, CHLOROPLASTIC |
| CAI8047549.1 | |
| CAI8047552.1 | |
| CAI8047553.1 | VALACYCLOVIR HYDROLASE |
| CAI8047551.1 | VALACYCLOVIR HYDROLASE |
| CAI8047550.1 | MULTI-COPPER OXIDASE |
| CAI8047554.1 | |
| CAI8047555.1 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| CAI8047556.1 | LEUCINE-SPECIFIC-BINDING PROTEIN |
| CAI8047557.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8047558.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI8047560.1 | |
| CAI8047559.1 | |
| CAI8047564.1 | |
| CAI8047563.1 | |
| CAI8047562.1 | |
| CAI8047561.1 | |
| CAI8047565.1 | |
| CAI8047566.1 | |
| CAI8047567.1 | |
| CAI8047568.1 | |
| CAI8047569.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8047570.1 | ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER |
