Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047671.1 | NA(+)/H(+) ANTIPORTER-RELATED |
| CAI8047672.1 | |
| CAI8047673.1 | ARYLSULFATASE FAMILY MEMBER |
| CAI8047674.1 | |
| CAI8047675.1 | PROTEIN TOLB HOMOLOG |
| CAI8047676.1 | PROTEIN TOLB HOMOLOG |
| CAI8047677.1 | ACETATE KINASE |
| CAI8047678.1 | |
| CAI8047679.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8047680.1 | MOXR FAMILY PROTEIN |
| CAI8047681.1 | DNA-BINDING PROTEIN HU |
| CAI8047682.1 | |
| CAI8047683.1 | 4-CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G11590) |
| CAI8047685.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8047684.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8047686.1 | WD40 REPEAT PROTEIN |
| CAI8047687.1 | |
| CAI8047688.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8047689.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED |
| CAI8047690.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED |
| CAI8047691.1 | |
| CAI8047692.1 | |
| CAI8047693.1 | |
| CAI8047694.1 | |
| CAI8047699.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047698.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047696.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047697.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047695.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047700.1 | LYSYL OXIDASE-LIKE-RELATED |
| CAI8047701.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8047702.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8047703.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8047704.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8047705.1 | |
| CAI8047706.1 | |
| CAI8047707.1 | |
| CAI8047708.1 | |
| CAI8047709.1 | |
| CAI8047710.1 | |
| CAI8047711.1 | |
| CAI8047713.1 | |
| CAI8047712.1 | JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN |
| CAI8047714.1 | |
| CAI8047715.1 | |
| CAI8047716.1 | |
| CAI8047717.1 | |
| CAI8047718.1 | HVA22-LIKE PROTEINS |
| CAI8047720.1 | T7-LIKE MITOCHONDRIAL DNA HELICASE |
| CAI8047719.1 | T7-LIKE MITOCHONDRIAL DNA HELICASE |
