Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047571.1 | SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED |
| CAI8047572.1 | INTELECTIN |
| CAI8047575.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| CAI8047578.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| CAI8047577.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| CAI8047576.1 | |
| CAI8047573.1 | WD REPEAT-CONTAINING PROTEIN POP1 |
| CAI8047574.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| CAI8047579.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| CAI8047580.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| CAI8047581.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| CAI8047582.1 | |
| CAI8047583.1 | |
| CAI8047584.1 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 |
| CAI8047585.1 | |
| CAI8047586.1 | TRANSAMIDASE |
| CAI8047587.1 | |
| CAI8047588.1 | TRANS-SULFURATION ENZYME FAMILY MEMBER |
| CAI8047589.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8047590.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI8047591.1 | IRON-SULFUR-BINDING OXIDOREDUCTASE FADF-RELATED-RELATED |
| CAI8047592.1 | ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT |
| CAI8047593.1 | ELECTRON TRANSFER FLAVOPROTEIN ALPHA |
| CAI8047594.1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
| CAI8047595.1 | CHOLINE MONOOXYGENASE, CHLOROPLASTIC |
| CAI8047597.1 | OXIDOREDUCTASE |
| CAI8047596.1 | |
| CAI8047598.1 | |
| CAI8047599.1 | HEAT SHOCK PROTEIN 90 FAMILY MEMBER |
| CAI8047600.1 | - |
| CAI8047601.1 | 3-KETO-5-AMINOHEXANOATE CLEAVAGE ENZYME-RELATED |
| CAI8047602.1 | |
| CAI8047603.1 | OXALATE-BINDING PROTEIN |
| CAI8047604.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8047605.1 | TRANSMEMBRANE PROTEIN 163 |
| CAI8047606.1 | ENDORIBONUCLEASE-RELATED |
| CAI8047607.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8047608.1 | COBALT-PRECORRIN-8 METHYLMUTASE |
| CAI8047609.1 | COBALT-PRECORRIN-6B C(15)-METHYLTRANSFERASE (DECARBOXYLATING) |
| CAI8047610.1 | FLAVIN REDUCTASE |
| CAI8047611.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT A |
| CAI8047612.1 | ALDEHYDE OXIDOREDUCTASE MOLYBDENUM COFACTOR ASSEMBLY PROTEIN |
| CAI8047613.1 | FOSMIDOMYCIN RESISTANCE PROTEIN |
| CAI8047614.1 | L-ASPARAGINASE |
| CAI8047615.1 | METALLOPHOSPHOESTERASE |
| CAI8047616.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8047617.1 | TRANSLATION FACTOR GUF1-RELATED |
| CAI8047619.1 | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE |
| CAI8047618.1 | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE |
| CAI8047620.1 | 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE, CHLOROPLASTIC |
