Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047621.1 | |
| CAI8047622.1 | |
| CAI8047624.1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
| CAI8047623.1 | |
| CAI8047625.1 | ATPASE INHIBITOR/5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| CAI8047626.1 | RIBONUCLEASE Y |
| CAI8047627.1 | |
| CAI8047628.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8047629.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8047630.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) |
| CAI8047631.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI8047632.1 | |
| CAI8047633.1 | NADPH-DEPENDENT 7-CYANO-7-DEAZAGUANINE REDUCTASE |
| CAI8047634.1 | GNAT FAMILY, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G00765)-RELATED-RELATED |
| CAI8047635.1 | ABC TRANSPORTER ATP-BINDING PROTEIN ALBC-RELATED |
| CAI8047636.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8047637.1 | METALLOPROTEASE |
| CAI8047638.1 | ENOYL-COA HYDRATASE |
| CAI8047639.1 | OBG GTPASE FAMILY |
| CAI8047640.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8047641.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8047642.1 | |
| CAI8047643.1 | |
| CAI8047644.1 | UNNAMED PRODUCT |
| CAI8047646.1 | STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1 |
| CAI8047645.1 | |
| CAI8047648.1 | STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1 |
| CAI8047647.1 | STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1 |
| CAI8047649.1 | TEKTIN |
| CAI8047650.1 | TEKTIN |
| CAI8047654.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8047653.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8047652.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8047651.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8047655.1 | |
| CAI8047656.1 | CONSERVED EXPRESSED OXIDOREDUCTASE (EUROFUNG) |
| CAI8047657.1 | 4-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED |
| CAI8047658.1 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
| CAI8047659.1 | BCDNA.GH03377 |
| CAI8047660.1 | PEROXISOMAL SARCOSINE OXIDASE |
| CAI8047661.1 | 3-HEXULOSE-6-PHOSPHATE ISOMERASE |
| CAI8047662.1 | 3-KETO-L-GULONATE-6-PHOSPHATE DECARBOXYLASE SGBH-RELATED |
| CAI8047663.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI8047664.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI8047665.1 | DNA-DIRECTED RNA POLYMERASE SUBUNIT OMEGA |
| CAI8047666.1 | |
| CAI8047667.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8047668.1 | RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN |
| CAI8047669.1 | FERRITIN |
| CAI8047670.1 |
