Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047725.1 | MACROPHAGE ERYTHROBLAST ATTACHER-RELATED |
| CAI8047722.1 | MACROPHAGE ERYTHROBLAST ATTACHER-RELATED |
| CAI8047724.1 | MACROPHAGE ERYTHROBLAST ATTACHER-RELATED |
| CAI8047721.1 | MACROPHAGE ERYTHROBLAST ATTACHER-RELATED |
| CAI8047723.1 | |
| CAI8047726.1 | TUDOR DOMAIN CONTAINING PROTEIN |
| CAI8047727.1 | |
| CAI8047728.1 | OS02G0815200 PROTEIN |
| CAI8047731.1 | BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN |
| CAI8047729.1 | BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN |
| CAI8047732.1 | BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN |
| CAI8047730.1 | BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN |
| CAI8047736.1 | AMINOTRANSFERASE CLASS III |
| CAI8047735.1 | AMINOTRANSFERASE CLASS III |
| CAI8047734.1 | AMINOTRANSFERASE CLASS III |
| CAI8047733.1 | AMINOTRANSFERASE CLASS III |
| CAI8047738.1 | MYOTUBULARIN-RELATED |
| CAI8047737.1 | MYOTUBULARIN-RELATED |
| CAI8047739.1 | MYOTUBULARIN-RELATED |
| CAI8047740.1 | |
| CAI8047741.1 | ATP-BINDING CASSETTE SUB-FAMILY C |
| CAI8047742.1 | RIBONUCLEASE P SUBUNIT P30 |
| CAI8047743.1 | SH3 MULTIPLE DOMAIN |
| CAI8047744.1 | CORTACTIN AND DREBRIN |
| CAI8047745.1 | CORTACTIN AND DREBRIN |
| CAI8047746.1 | CORTACTIN AND DREBRIN |
| CAI8047747.1 | CORTACTIN AND DREBRIN |
| CAI8047748.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| CAI8047749.1 | DYNEIN INTERMEDIATE CHAIN |
| CAI8047750.1 | DYNEIN INTERMEDIATE CHAIN |
| CAI8047751.1 | |
| CAI8047752.1 | |
| CAI8047755.1 | |
| CAI8047754.1 | |
| CAI8047753.1 | |
| CAI8047756.1 | |
| CAI8047757.1 | |
| CAI8047758.1 | |
| CAI8047759.1 | |
| CAI8047760.1 | NNMT/PNMT/TEMT FAMILY MEMBER |
| CAI8047761.1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| CAI8047762.1 | SERINE HYDROXYMETHYLTRANSFERASE |
| CAI8047763.1 | 4-CARBOXYMUCONOLACTONE DECARBOXYLASE FAMILY PROTEIN |
| CAI8047764.1 | HTH-TYPE TRANSCRIPTIONAL REGULATOR |
| CAI8047765.1 | TRANSPOSASE INSH FOR INSERTION SEQUENCE ELEMENT IS5A-RELATED |
| CAI8047767.1 | MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED |
| CAI8047766.1 | MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED |
| CAI8047768.1 | |
| CAI8047769.1 | AMINOBENZOATE/ANTHRANILATE SYNTHASE |
| CAI8047770.1 | SNF2/RAD54 HELICASE FAMILY |
