Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047471.1 | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED |
| CAI8047473.1 | HEAT-SHOCK PROTEIN 20 FAMILY MEMBER |
| CAI8047472.1 | |
| CAI8047474.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8047476.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8047475.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8047477.1 | DELTA-AMINOLEVULINIC ACID DEHYDRATASE |
| CAI8047478.1 | SIROHEME SYNTHASE-RELATED |
| CAI8047479.1 | SIROHEME SYNTHASE-RELATED |
| CAI8047481.1 | SIROHEME BIOSYNTHESIS PROTEIN MET8 |
| CAI8047480.1 | SIROHEME SYNTHASE-RELATED |
| CAI8047482.1 | |
| CAI8047483.1 | TRANSCRIPTIONAL REGULATOR, ASNC FAMILY |
| CAI8047484.1 | TRANSCRIPTIONAL REGULATOR, ASNC FAMILY |
| CAI8047485.1 | |
| CAI8047486.1 | SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE |
| CAI8047487.1 | - |
| CAI8047488.1 | |
| CAI8047492.1 | |
| CAI8047491.1 | |
| CAI8047490.1 | |
| CAI8047489.1 | |
| CAI8047493.1 | |
| CAI8047494.1 | |
| CAI8047495.1 | |
| CAI8047496.1 | |
| CAI8047498.1 | |
| CAI8047497.1 | |
| CAI8047499.1 | |
| CAI8047500.1 | |
| CAI8047501.1 | |
| CAI8047502.1 | PROTEIN SIDEKICK |
| CAI8047503.1 | |
| CAI8047504.1 | |
| CAI8047505.1 | ESPIN |
| CAI8047506.1 | SURFACE ANTIGEN BSPA-LIKE-RELATED |
| CAI8047507.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| CAI8047511.1 | COATOMER SUBUNIT DELTA |
| CAI8047509.1 | COATOMER SUBUNIT DELTA |
| CAI8047510.1 | COATOMER SUBUNIT DELTA |
| CAI8047508.1 | COATOMER SUBUNIT DELTA |
| CAI8047512.1 | |
| CAI8047513.1 | |
| CAI8047514.1 | |
| CAI8047515.1 | HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE |
| CAI8047516.1 | ASPARTATE KINASE |
| CAI8047517.1 | NITROREDUCTASE MJ1384-RELATED |
| CAI8047519.1 | DIHYDRONEOPTERIN ALDOLASE 1-RELATED |
| CAI8047518.1 | DIHYDRONEOPTERIN ALDOLASE 1-RELATED |
| CAI8047520.1 | LYASE BETA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G13030)-RELATED |
