Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047221.1 | BREAST CARCINOMA AMPLIFIED SEQUENCE 3 |
| CAI8047223.1 | BREAST CARCINOMA AMPLIFIED SEQUENCE 3 |
| CAI8047222.1 | BREAST CARCINOMA AMPLIFIED SEQUENCE 3 |
| CAI8047224.1 | BREAST CARCINOMA AMPLIFIED SEQUENCE 3 |
| CAI8047225.1 | BREAST CARCINOMA AMPLIFIED SEQUENCE 3 |
| CAI8047231.1 | GPI TRANSAMIDASE COMPONENT PIG-S |
| CAI8047232.1 | GPI TRANSAMIDASE COMPONENT PIG-S |
| CAI8047230.1 | GPI TRANSAMIDASE COMPONENT PIG-S |
| CAI8047229.1 | GPI TRANSAMIDASE COMPONENT PIG-S |
| CAI8047228.1 | GPI TRANSAMIDASE COMPONENT PIG-S |
| CAI8047227.1 | GPI TRANSAMIDASE COMPONENT PIG-S |
| CAI8047226.1 | GPI TRANSAMIDASE COMPONENT PIG-S |
| CAI8047233.1 | GPI TRANSAMIDASE COMPONENT PIG-S |
| CAI8047234.1 | CDC45-RELATED PROTEIN |
| CAI8047235.1 | CDC45-RELATED PROTEIN |
| CAI8047238.1 | CDC45-RELATED PROTEIN |
| CAI8047237.1 | CDC45-RELATED PROTEIN |
| CAI8047239.1 | CDC45-RELATED PROTEIN |
| CAI8047236.1 | CDC45-RELATED PROTEIN |
| CAI8047240.1 | CDC45-RELATED PROTEIN |
| CAI8047241.1 | CDC45-RELATED PROTEIN |
| CAI8047242.1 | SOLUTE CARRIER FAMILY 13 MEMBER |
| CAI8047245.1 | SOLUTE CARRIER FAMILY 13 MEMBER |
| CAI8047247.1 | SOLUTE CARRIER FAMILY 13 MEMBER |
| CAI8047244.1 | SOLUTE CARRIER FAMILY 13 MEMBER |
| CAI8047246.1 | SOLUTE CARRIER FAMILY 13 MEMBER |
| CAI8047243.1 | SOLUTE CARRIER FAMILY 13 MEMBER |
| CAI8047248.1 | T-BOX PROTEIN-RELATED |
| CAI8047249.1 | |
| CAI8047250.1 | |
| CAI8047251.1 | |
| CAI8047252.1 | |
| CAI8047253.1 | TYROSINE-PROTEIN KINASE |
| CAI8047254.1 | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED |
| CAI8047255.1 | BIOTIN SYNTHASE |
| CAI8047256.1 | BIOTIN SYNTHASE |
| CAI8047257.1 | BIOTIN SYNTHASE |
| CAI8047258.1 | BIOTIN SYNTHASE |
| CAI8047259.1 | BIOTIN SYNTHASE |
| CAI8047260.1 | PHOSPHATASE DCR2-RELATED-RELATED |
| CAI8047262.1 | ATP7, ISOFORM B |
| CAI8047261.1 | ATP7, ISOFORM B |
| CAI8047263.1 | ATP7, ISOFORM B |
| CAI8047264.1 | ATP7, ISOFORM B |
| CAI8047265.1 | UDP-N-ACETYL-2-AMINO-2-DEOXY-D-GLUCURONATE OXIDASE |
| CAI8047266.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 |
| CAI8047267.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 |
| CAI8047268.1 | NADH DEHYDROGENASE SUBUNIT 1 |
| CAI8047269.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8047270.1 | NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1 |
