Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7999009.1 | DNA REPAIR PROTEIN RADA |
| CAI7999007.1 | DNA REPAIR PROTEIN RADA |
| CAI7999005.1 | DNA REPAIR PROTEIN RADA |
| CAI7999013.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI7999015.1 | AMINO ACID IMPORT ATP-BINDING PROTEIN |
| CAI7999023.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI7999021.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI7999019.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI7999017.1 | 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE |
| CAI7999025.1 | ASPARTATE AMINOTRANSFERASE |
| CAI7999027.1 | NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE |
| CAI7999042.1 | PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR |
| CAI7999044.1 | |
| CAI7999046.1 | |
| CAI7999048.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7999052.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7999050.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7999054.1 | |
| CAI7999056.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7999072.1 | TYROSINE-PROTEIN KINASE |
| CAI7999070.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7999068.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7999066.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7999064.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7999062.1 | TYROSINE-PROTEIN KINASE |
| CAI7999060.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7999058.1 | TYROSINE-PROTEIN KINASE |
| CAI7999076.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7999074.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7999078.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7999080.1 | |
| CAI7999082.1 | |
| CAI7999084.1 | |
| CAI7999086.1 | |
| CAI7999088.1 | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER |
| CAI7999090.1 | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER |
| CAI7999092.1 | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER |
| CAI7999094.1 | |
| CAI7999098.1 | |
| CAI7999096.1 | |
| CAI7999100.1 | CENTROMERE PROTEIN E |
| CAI7999108.1 | KETIMINE REDUCTASE MU-CRYSTALLIN |
| CAI7999104.1 | KETIMINE REDUCTASE MU-CRYSTALLIN |
| CAI7999106.1 | KETIMINE REDUCTASE MU-CRYSTALLIN |
| CAI7999102.1 | SJOEGREN SYNDROME NUCLEAR AUTOANTIGEN 1 |
| CAI7999110.1 | ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1 |
| CAI7999112.1 | ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1 |
| CAI7999114.1 | BARDET-BIEDL SYNDROME 1 PROTEIN |
| CAI7999116.1 | |
| CAI7999118.1 |
