Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7998539.1 | ELONGATION FACTOR TU-RELATED |
| CAI7998541.1 | |
| CAI7998543.1 | PROBABLE 2-DEHYDROPANTOATE 2-REDUCTASE |
| CAI7998545.1 | D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G10090) |
| CAI7998547.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI7998549.1 | MONOACYLGLYCEROL LIPASE |
| CAI7998551.1 | SLL0198 PROTEIN-RELATED |
| CAI7998553.1 | CELL SURFACE PROTEIN |
| CAI7998555.1 | |
| CAI7998557.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI7998565.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7998563.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7998561.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7998559.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7998567.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7998571.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7998573.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7998575.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7998569.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7998579.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7998577.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7998581.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7998583.1 | SUGAR KINASE |
| CAI7998585.1 | UPF0127 PROTEIN MJ1496 |
| CAI7998587.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI7998589.1 | |
| CAI7998591.1 | |
| CAI7998593.1 | |
| CAI7998595.1 | |
| CAI7998597.1 | |
| CAI7998599.1 | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE SLYD |
| CAI7998601.1 | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE SLYD |
| CAI7998605.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI7998603.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI7998607.1 | |
| CAI7998610.1 | |
| CAI7998654.1 | TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE |
| CAI7998656.1 | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT |
| CAI7998658.1 | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT |
| CAI7998660.1 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| CAI7998662.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI7998664.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI7998666.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI7998668.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI7998670.1 | 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
| CAI7998672.1 | ORNITHINE CARBAMOYLTRANSFERASE, MITOCHONDRIAL |
| CAI7998674.1 | GTPASE DER |
| CAI7998676.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI7998678.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI7998680.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
