Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7998788.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI7998786.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI7998784.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI7998782.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI7998790.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI7998792.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI7998794.1 | |
| CAI7998800.1 | RIBOSOMAL PROTEIN S7 |
| CAI7998798.1 | RIBOSOMAL PROTEIN S7 |
| CAI7998796.1 | RIBOSOMAL PROTEIN S7 |
| CAI7998802.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI7998804.1 | GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE |
| CAI7998806.1 | FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE |
| CAI7998808.1 | GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN |
| CAI7998810.1 | NH 3 /GLUTAMINE-DEPENDENT NAD + SYNTHETASE |
| CAI7998812.1 | PEPTIDASE S12 |
| CAI7998814.1 | RECA |
| CAI7998820.1 | BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH |
| CAI7998824.1 | BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH |
| CAI7998826.1 | BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH |
| CAI7998822.1 | BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH |
| CAI7998818.1 | BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH |
| CAI7998816.1 | BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN PURH |
| CAI7998830.1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
| CAI7998828.1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
| CAI7998832.1 | AMIDOPHOSPHORIBOSYLTRANSFERASE |
| CAI7998836.1 | HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE |
| CAI7998834.1 | HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE |
| CAI7998838.1 | ASPARTATE KINASE |
| CAI7998840.1 | DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1 |
| CAI7998844.1 | UVRABC SYSTEM PROTEIN A |
| CAI7998842.1 | UVRABC SYSTEM PROTEIN A |
| CAI7998846.1 | UVRABC SYSTEM PROTEIN A |
| CAI7998848.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7998850.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI7998852.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI7998854.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI7998856.1 | - |
| CAI7998858.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI7998860.1 | BIFUNCTIONAL TH2 PROTEIN |
| CAI7998862.1 | |
| CAI7998864.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI7998866.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI7998868.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI7998895.1 | D-GALACTONATE DEHYDRATASE-RELATED |
| CAI7998897.1 | |
| CAI7998899.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI7998901.1 | DNA HELICASE RECQ FAMILY MEMBER |
| CAI7998903.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI7998905.1 | QUINOL MONOOXYGENASE YGIN-RELATED |
