Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7999122.1 | PROTEIN DISULFIDE ISOMERASE |
| CAI7999120.1 | PROTEIN DISULFIDE ISOMERASE |
| CAI7999124.1 | PROTEIN DISULFIDE ISOMERASE |
| CAI7999126.1 | - |
| CAI7999130.1 | |
| CAI7999132.1 | |
| CAI7999134.1 | 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC |
| CAI7999136.1 | 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC |
| CAI7999138.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI7999139.1 | D-LACTATE DEHYDROGENASE |
| CAI7999140.1 | |
| CAI7999141.1 | |
| CAI7999142.1 | 2-HYDROXYACID DEHYDROGENASE-RELATED |
| CAI7999143.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7999144.1 | |
| CAI7999146.1 | SISTER CHROMATID COHESION PROTEIN DCC1-RELATED |
| CAI7999145.1 | SISTER CHROMATID COHESION PROTEIN DCC1-RELATED |
| CAI7999148.1 | SISTER CHROMATID COHESION PROTEIN DCC1-RELATED |
| CAI7999149.1 | SISTER CHROMATID COHESION PROTEIN DCC1-RELATED |
| CAI7999147.1 | SISTER CHROMATID COHESION PROTEIN DCC1-RELATED |
| CAI7999151.1 | DEP DOMAIN PROTEIN |
| CAI7999150.1 | DEP DOMAIN PROTEIN |
| CAI7999153.1 | DEP DOMAIN PROTEIN |
| CAI7999152.1 | DEP DOMAIN PROTEIN |
| CAI7999154.1 | PDZ DOMAIN CONTAINING PROTEIN |
| CAI7999156.1 | CELL DIVISION CONTROL PROTEIN 6-RELATED |
| CAI7999155.1 | CELL DIVISION CONTROL PROTEIN 6-RELATED |
| CAI7999157.1 | |
| CAI7999160.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI7999159.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI7999158.1 | |
| CAI7999161.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI7999163.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI7999164.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI7999162.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI7999166.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI7999165.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI7999167.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI7999168.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI7999169.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI7999170.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI7999171.1 | PDZ DOMAIN CONTAINING PROTEIN |
| CAI7999172.1 | |
| CAI7999173.1 | |
| CAI7999174.1 | |
| CAI7999176.1 | DEOXYCYTIDYLATE DEAMINASE-RELATED |
| CAI7999175.1 | |
| CAI7999177.1 | |
| CAI7999178.1 | |
| CAI7999179.1 |
