Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7998907.1 | POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE-RELATED |
| CAI7998909.1 | POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE-RELATED |
| CAI7998911.1 | POLYPHOSPHATE:AMP PHOSPHOTRANSFERASE-RELATED |
| CAI7998913.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI7998915.1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
| CAI7998917.1 | THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED |
| CAI7998919.1 | HYDROXYACYL-THIOESTER DEHYDRATASE TYPE 2, MITOCHONDRIAL-RELATED |
| CAI7998921.1 | FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN PLSX |
| CAI7998923.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7998925.1 | OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY (AFU_ORTHOLOGUE AFUA_5G02870) |
| CAI7998927.1 | |
| CAI7998929.1 | IRON-SULFUR CLUSTER ASSEMBLY PROTEIN |
| CAI7998933.1 | |
| CAI7998931.1 | |
| CAI7998935.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI7998937.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI7998939.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI7998941.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI7998943.1 | |
| CAI7998945.1 | DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER |
| CAI7998951.1 | PHAGE INTEGRASE-RELATED |
| CAI7998949.1 | PHAGE INTEGRASE-RELATED |
| CAI7998947.1 | PHAGE INTEGRASE-RELATED |
| CAI7998953.1 | LIPOPROTEIN-RELEASING SYSTEM ATP-BINDING PROTEIN LOLD |
| CAI7998955.1 | MEMBRANE COMPONENT OF TRANSPORTER-RELATED |
| CAI7998957.1 | TRANSCRIPTIONAL REGULATOR, ASNC FAMILY |
| CAI7998959.1 | SIROHEME BIOSYNTHESIS PROTEIN MET8 |
| CAI7998961.1 | PORPHOBILINOGEN DEAMINASE |
| CAI7998963.1 | PORPHOBILINOGEN DEAMINASE |
| CAI7998965.1 | SIROHEME SYNTHASE-RELATED |
| CAI7998967.1 | DELTA-AMINOLEVULINIC ACID DEHYDRATASE |
| CAI7998969.1 | DELTA-AMINOLEVULINIC ACID DEHYDRATASE |
| CAI7998971.1 | |
| CAI7998977.1 | DNA REPAIR PROTEIN RADC |
| CAI7998975.1 | DNA REPAIR PROTEIN RADC |
| CAI7998973.1 | DNA REPAIR PROTEIN RADC |
| CAI7998979.1 | PEPTIDASE T |
| CAI7998981.1 | LAR_N DOMAIN-CONTAINING PROTEIN |
| CAI7998983.1 | 39S RIBOSOMAL PROTEIN L12 |
| CAI7998985.1 | 39S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL |
| CAI7998987.1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
| CAI7998989.1 | 60S RIBOSOMAL PROTEIN L12 |
| CAI7998991.1 | RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG |
| CAI7998997.1 | ELONGATION FACTOR TU-RELATED |
| CAI7998999.1 | ELONGATION FACTOR TU-RELATED |
| CAI7999001.1 | ELONGATION FACTOR TU-RELATED |
| CAI7998995.1 | ELONGATION FACTOR TU-RELATED |
| CAI7998993.1 | ELONGATION FACTOR TU-RELATED |
| CAI7999003.1 | NICKEL INSERTION PROTEIN-RELATED |
| CAI7999011.1 | DNA REPAIR PROTEIN RADA |
