Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7998300.1 | |
| CAI7998302.1 | |
| CAI7998304.1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| CAI7998306.1 | |
| CAI7998308.1 | RE60986P |
| CAI7998310.1 | RE60986P |
| CAI7998312.1 | RE60986P |
| CAI7998314.1 | RE60986P |
| CAI7998318.1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| CAI7998320.1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| CAI7998316.1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| CAI7998322.1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
| CAI7998324.1 | IMPORTIN-7, 8, 11 |
| CAI7998328.1 | HELICASE RELATED |
| CAI7998326.1 | HELICASE RELATED |
| CAI7998333.1 | RFX TRANSCRIPTION FACTOR FAMILY |
| CAI7998335.1 | DI-N-ACETYLCHITOBIASE |
| CAI7998341.1 | TETRASPANIN |
| CAI7998343.1 | TETRASPANIN |
| CAI7998339.1 | TETRASPANIN |
| CAI7998337.1 | TETRASPANIN |
| CAI7998346.1 | PYRUVATE CARBOXYLASE SUBUNIT A |
| CAI7998348.1 | PYRUVATE CARBOXYLASE |
| CAI7998350.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI7998352.1 | |
| CAI7998354.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI7998357.1 | B9 DOMAIN-CONTAINING |
| CAI7998359.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI7998361.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI7998367.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI7998369.1 | |
| CAI7998371.1 | 1,2-DIOXYGENASE PROTEIN-RELATED |
| CAI7998373.1 | 1,2-DIOXYGENASE PROTEIN-RELATED |
| CAI7998375.1 | ZINC PHOSPHODIESTERASE ELAC PROTEIN 2 |
| CAI7998377.1 | MAGNESIUM-CHELATASE SUBUNIT CHLI |
| CAI7998379.1 | |
| CAI7998381.1 | |
| CAI7998383.1 | WINGED HELIX-TURN-HELIX TRANSCRIPTIONAL REGULATOR, RRF2 FAMILY |
| CAI7998385.1 | |
| CAI7998387.1 | UBIQUITIN-ACTIVATING ENZYME E1 |
| CAI7998389.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI7998391.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI7998405.1 | 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE |
| CAI7998407.1 | PATCHED-RELATED |
| CAI7998409.1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 3 |
| CAI7998411.1 | TELOMERASE PROTEIN COMPONENT 1 TEP1 |
| CAI7998419.1 | MYOTUBULARIN-RELATED |
| CAI7998421.1 | MYOTUBULARIN-RELATED |
| CAI7998417.1 | MYOTUBULARIN-RELATED |
| CAI7998415.1 | MYOTUBULARIN-RELATED |
