Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7998058.1 | RIIA DOMAIN-CONTAINING PROTEIN 1 |
| CAI7998060.1 | ZINC FINGER PROTEIN |
| CAI7998064.1 | PR DOMAIN ZINC FINGER PROTEIN |
| CAI7998062.1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| CAI7998094.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED |
| CAI7998096.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI7998098.1 | HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE |
| CAI7998100.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI7998102.1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| CAI7998104.1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| CAI7998110.1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| CAI7998106.1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| CAI7998108.1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| CAI7998112.1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| CAI7998114.1 | PEROXYUREIDOACRYLATE/UREIDOACRYLATE AMIDOHYDROLASE-RELATED |
| CAI7998118.1 | L-THREONINE ALDOLASE-RELATED |
| CAI7998116.1 | L-THREONINE ALDOLASE-RELATED |
| CAI7998122.1 | GLUTAMINE-TRNA LIGASE |
| CAI7998120.1 | GLUTAMINE-TRNA LIGASE |
| CAI7998124.1 | GLUTAMINE-TRNA LIGASE |
| CAI7998126.1 | GLUTAMINE-TRNA LIGASE |
| CAI7998128.1 | DNA ADENINE METHYLASE |
| CAI7998130.1 | |
| CAI7998132.1 | GLUTAMATE--TRNA LIGASE |
| CAI7998134.1 | QUORUM-QUENCHING LACTONASE YTNP-RELATED-RELATED |
| CAI7998136.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI7998138.1 | PROTEASE HTPX |
| CAI7998140.1 | |
| CAI7998142.1 | |
| CAI7998144.1 | |
| CAI7998146.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI7998148.1 | BLR5969 PROTEIN |
| CAI7998150.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 38 |
| CAI7998152.1 | |
| CAI7998154.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI7998156.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI7998158.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI7998160.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI7998162.1 | PEROXYUREIDOACRYLATE/UREIDOACRYLATE AMIDOHYDROLASE-RELATED |
| CAI7998164.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI7998166.1 | |
| CAI7998168.1 | TRANSAMIDASE |
| CAI7998170.1 | |
| CAI7998172.1 | |
| CAI7998174.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI7998176.1 | |
| CAI7998178.1 | |
| CAI7998186.1 | CITRATE SYNTHASE |
| CAI7998184.1 | CITRATE SYNTHASE |
| CAI7998182.1 | CITRATE SYNTHASE |
