Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7997477.1 | OROTIDINE 5'-PHOSPHATE DECARBOXYLASE |
| CAI7997479.1 | OROTIDINE 5'-PHOSPHATE DECARBOXYLASE |
| CAI7997481.1 | HYPOTHETICAL CYTOSOLIC PROTEIN |
| CAI7997483.1 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
| CAI7997495.1 | D-LACTATE DEHYDROGENASE |
| CAI7997497.1 | OXIDOREDUCTASE CATD-RELATED |
| CAI7997499.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI7997501.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI7997509.1 | 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC |
| CAI7997505.1 | 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC |
| CAI7997507.1 | 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC |
| CAI7997503.1 | 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC |
| CAI7997511.1 | AAA FAMILY ATPASE |
| CAI7997513.1 | |
| CAI7997515.1 | |
| CAI7997517.1 | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER |
| CAI7997519.1 | IMPORT ATP-BINDING PROTEIN |
| CAI7997521.1 | |
| CAI7997523.1 | IMPORT ATP-BINDING PROTEIN |
| CAI7997525.1 | AMIDASE 1 |
| CAI7997527.1 | REGULATORY PROTEIN, FMDB FAMILY |
| CAI7997529.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI7997531.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI7997533.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI7997535.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI7997537.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI7997539.1 | D-TYROSYL-TRNA TYR DEACYLASE |
| CAI7997543.1 | NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] |
| CAI7997541.1 | NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] |
| CAI7997545.1 | L-ASPARTATE OXIDASE |
| CAI7997549.1 | L-ASPARTATE OXIDASE |
| CAI7997551.1 | L-ASPARTATE OXIDASE |
| CAI7997547.1 | L-ASPARTATE OXIDASE |
| CAI7997553.1 | |
| CAI7997555.1 | |
| CAI7997557.1 | DIHYDROOROTASE-RELATED |
| CAI7997559.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| CAI7997561.1 | NUCLEOID-ASSOCIATED PROTEIN YBAB |
| CAI7997563.1 | RECOMBINATION PROTEIN RECR |
| CAI7997565.1 | RECOMBINATION PROTEIN RECR |
| CAI7997567.1 | DNA REPAIR PROTEIN RECO |
| CAI7997569.1 | |
| CAI7997571.1 | UVRABC SYSTEM PROTEIN A |
| CAI7997573.1 | |
| CAI7997575.1 | UVRABC SYSTEM PROTEIN A |
| CAI7997579.1 | |
| CAI7997581.1 | |
| CAI7997583.1 | |
| CAI7997595.1 | |
| CAI7997597.1 |
