Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7997824.1 | 3-KETO-5-AMINOHEXANOATE CLEAVAGE ENZYME-RELATED |
| CAI7997826.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI7997828.1 | NADH-QUINONE OXIDOREDUCTASE SUBUNIT F |
| CAI7997830.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI7997832.1 | ACID HYDRATASE |
| CAI7997834.1 | ACID HYDRATASE |
| CAI7997836.1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
| CAI7997838.1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
| CAI7997840.1 | BLR5612 PROTEIN |
| CAI7997842.1 | BLR5612 PROTEIN |
| CAI7997844.1 | |
| CAI7997846.1 | |
| CAI7997849.1 | |
| CAI7997851.1 | |
| CAI7997853.1 | |
| CAI7997855.1 | |
| CAI7997872.1 | DNA LIGASE 1/3 FAMILY MEMBER |
| CAI7997870.1 | DNA LIGASE 1/3 FAMILY MEMBER |
| CAI7997868.1 | DNA LIGASE 1/3 FAMILY MEMBER |
| CAI7997866.1 | DNA LIGASE 1/3 FAMILY MEMBER |
| CAI7997874.1 | |
| CAI7997878.1 | TYROSINE-PROTEIN KINASE |
| CAI7997876.1 | |
| CAI7997884.1 | |
| CAI7997882.1 | TYROSINE-PROTEIN KINASE |
| CAI7997880.1 | TYROSINE-PROTEIN KINASE |
| CAI7997886.1 | TYROSINE-PROTEIN KINASE |
| CAI7997888.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7997890.1 | TYROSINE-PROTEIN KINASE |
| CAI7997892.1 | |
| CAI7997894.1 | |
| CAI7997898.1 | |
| CAI7997896.1 | |
| CAI7997900.1 | |
| CAI7997902.1 | |
| CAI7997906.1 | |
| CAI7997908.1 | MEMBRANE ASSOCIATED GUANYLATE KINASE-RELATED |
| CAI7997910.1 | |
| CAI7997912.1 | |
| CAI7997915.1 | - |
| CAI7997917.1 | - |
| CAI7997919.1 | - |
| CAI7997923.1 | |
| CAI7997925.1 | |
| CAI7997927.1 | |
| CAI7997929.1 | FLAVIN MONOAMINE OXIDASE |
| CAI7997932.1 | |
| CAI7997934.1 | |
| CAI7997937.1 | |
| CAI7997939.1 |
