Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7997941.1 | |
| CAI7997943.1 | |
| CAI7997945.1 | |
| CAI7997947.1 | |
| CAI7997949.1 | |
| CAI7997956.1 | TRANSAMIDASE |
| CAI7997958.1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
| CAI7997960.1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
| CAI7997968.1 | GLUTAMATE DEHYDROGENASE |
| CAI7997962.1 | GLUTAMATE DEHYDROGENASE |
| CAI7997964.1 | GLUTAMATE DEHYDROGENASE |
| CAI7997966.1 | GLUTAMATE DEHYDROGENASE |
| CAI7997970.1 | ABC TRANSPORTER ATP-BINDING PROTEIN |
| CAI7997972.1 | - |
| CAI7997974.1 | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA |
| CAI7997976.1 | SEL-1-LIKE PROTEIN |
| CAI7997978.1 | SLR6095 PROTEIN |
| CAI7997980.1 | |
| CAI7997982.1 | MOLYBDATE-BINDING PERIPLASMIC PROTEIN |
| CAI7997984.1 | MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB |
| CAI7997986.1 | ABC TRANSPORTER I FAMILY MEMBER 10 |
| CAI7997988.1 | SUGAR NUCLEOTIDE EPIMERASE RELATED |
| CAI7997990.1 | RIBONUCLEASE VAPC2 |
| CAI7997992.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI7997994.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI7997996.1 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| CAI7997998.1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 12 |
| CAI7998003.1 | LYSINE/ARGININE/ORNITHINE TRANSPORT SYSTEM KINASE |
| CAI7998005.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI7998007.1 | TRANSLATION FACTOR |
| CAI7998013.1 | SULFATE ADENYLYLTRANSFERASE SUBUNIT 2 |
| CAI7998011.1 | SULFATE ADENYLYLTRANSFERASE SUBUNIT 2 |
| CAI7998009.1 | SULFATE ADENYLYLTRANSFERASE SUBUNIT 2 |
| CAI7998015.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI7998017.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI7998027.1 | LD44762P |
| CAI7998025.1 | LD44762P |
| CAI7998029.1 | LD44762P |
| CAI7998031.1 | |
| CAI7998033.1 | |
| CAI7998039.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
| CAI7998037.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
| CAI7998035.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
| CAI7998041.1 | |
| CAI7998043.1 | |
| CAI7998045.1 | |
| CAI7998051.1 | |
| CAI7998049.1 | |
| CAI7998047.1 | |
| CAI7998056.1 |
