About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI7998180.1CITRATE SYNTHASE
CAI7998188.1ANTITOXIN HIGA-1
CAI7998190.1TOXIN HIGB-1
CAI7998192.1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
CAI7998194.1FLAVOPROTEIN OXYGENASE
CAI7998196.1
CAI7998198.1ZINC UPTAKE REGULATION PROTEIN
CAI7998200.1ACETYL-COA C-ACETYLTRANSFERASE
CAI7998202.1BLR3430 PROTEIN
CAI7998204.1
CAI7998206.1
CAI7998208.1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
CAI7998210.1
CAI7998212.1ENOYL-COA HYDRATASE-RELATED
CAI7998214.1L-THREONINE 3-DEHYDROGENASE
CAI7998216.1HYDROLASE ALPHA/BETA FOLD FAMILY
CAI7998218.1
CAI7998220.1
CAI7998222.1
CAI7998224.1LUCIFERASE-LIKE MONOOXYGENASE
CAI7998226.1
CAI7998228.1PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT
CAI7998234.1PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR
CAI7998232.1PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR
CAI7998230.1PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR
CAI7998236.1CHLORINASE MJ1651
CAI7998238.1
CAI7998240.1GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED
CAI7998242.1COV-LIKE PROTEIN 1
CAI7998248.1METHYLTRANSFERASE
CAI7998246.1METHYLTRANSFERASE
CAI7998244.1
CAI7998250.1DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820)
CAI7998252.1FLAVIN PRENYLTRANSFERASE
CAI7998260.13-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED
CAI7998258.13-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED
CAI7998256.13-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED
CAI7998254.13-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED
CAI7998262.1F420H(2)-DEPENDENT QUINONE REDUCTASE RV1261C
CAI7998264.1FAD-BINDING PROTEIN
CAI7998280.1NYD-SP28 PROTEIN
CAI7998282.1NYD-SP28 PROTEIN
CAI7998284.1E3 UBIQUITIN-PROTEIN LIGASE TRIP12
CAI7998286.1HAUS AUGMIN-LIKE COMPLEX SUBUNIT 5
CAI7998288.1CYSTEINE PROTEASE FAMILY C1-RELATED
CAI7998290.1CYSTEINE PROTEASE FAMILY C1-RELATED
CAI7998292.1CYSTEINE PROTEASE FAMILY C1-RELATED
CAI7998294.1NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1
CAI7998296.1MATRIN 3/NUCLEAR PROTEIN 220-RELATED
CAI7998298.1LEUCINE RICH REPEAT KINASE 2
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