Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7998180.1 | CITRATE SYNTHASE |
| CAI7998188.1 | ANTITOXIN HIGA-1 |
| CAI7998190.1 | TOXIN HIGB-1 |
| CAI7998192.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI7998194.1 | FLAVOPROTEIN OXYGENASE |
| CAI7998196.1 | |
| CAI7998198.1 | ZINC UPTAKE REGULATION PROTEIN |
| CAI7998200.1 | ACETYL-COA C-ACETYLTRANSFERASE |
| CAI7998202.1 | BLR3430 PROTEIN |
| CAI7998204.1 | |
| CAI7998206.1 | |
| CAI7998208.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI7998210.1 | |
| CAI7998212.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI7998214.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI7998216.1 | HYDROLASE ALPHA/BETA FOLD FAMILY |
| CAI7998218.1 | |
| CAI7998220.1 | |
| CAI7998222.1 | |
| CAI7998224.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI7998226.1 | |
| CAI7998228.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT |
| CAI7998234.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI7998232.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI7998230.1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| CAI7998236.1 | CHLORINASE MJ1651 |
| CAI7998238.1 | |
| CAI7998240.1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
| CAI7998242.1 | COV-LIKE PROTEIN 1 |
| CAI7998248.1 | METHYLTRANSFERASE |
| CAI7998246.1 | METHYLTRANSFERASE |
| CAI7998244.1 | |
| CAI7998250.1 | DIHYDROFOLATE REDUCTASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_8G06820) |
| CAI7998252.1 | FLAVIN PRENYLTRANSFERASE |
| CAI7998260.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI7998258.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI7998256.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI7998254.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI7998262.1 | F420H(2)-DEPENDENT QUINONE REDUCTASE RV1261C |
| CAI7998264.1 | FAD-BINDING PROTEIN |
| CAI7998280.1 | NYD-SP28 PROTEIN |
| CAI7998282.1 | NYD-SP28 PROTEIN |
| CAI7998284.1 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
| CAI7998286.1 | HAUS AUGMIN-LIKE COMPLEX SUBUNIT 5 |
| CAI7998288.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI7998290.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI7998292.1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
| CAI7998294.1 | NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 |
| CAI7998296.1 | MATRIN 3/NUCLEAR PROTEIN 220-RELATED |
| CAI7998298.1 | LEUCINE RICH REPEAT KINASE 2 |
