Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7997024.1 | UPF0102 PROTEIN YRAN |
| CAI7997026.1 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE |
| CAI7997028.1 | |
| CAI7997030.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI7997052.1 | |
| CAI7997054.1 | CYTOSINE-SPECIFIC METHYLTRANSFERASE |
| CAI7997056.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 20 |
| CAI7997058.1 | ISOCITRATE DEHYDROGENASE [NADP] |
| CAI7997060.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI7997062.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI7997064.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI7997066.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI7997068.1 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
| CAI7997070.1 | UDP/ADP-SUGAR PYROPHOSPHATASE |
| CAI7997072.1 | NAD KINASE |
| CAI7997074.1 | NADH DEHYDROGENASE |
| CAI7997076.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 |
| CAI7997078.1 | |
| CAI7997082.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI7997080.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI7997084.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI7997086.1 | |
| CAI7997088.1 | GLYOXALASE-RELATED |
| CAI7997090.1 | ACYL-ACTIVATING ENZYME |
| CAI7997091.1 | |
| CAI7997092.1 | |
| CAI7997093.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI7997094.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI7997095.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI7997098.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI7997097.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI7997096.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI7997099.1 | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE |
| CAI7997100.1 | SOLEUCYL-TRNA SYNTHETASE |
| CAI7997101.1 | |
| CAI7997102.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI7997103.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI7997104.1 | |
| CAI7997105.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI7997107.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7997106.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7997108.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7997109.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7997110.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI7997111.1 | CELL SURFACE PROTEIN |
| CAI7997112.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI7997113.1 | |
| CAI7997114.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI7997115.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI7997116.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
