Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7996690.1 | CATECHOL-2,3-DIOXYGENASE |
| CAI7996692.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI7996694.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI7996700.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7996698.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI7996696.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI7996714.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7996712.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7996702.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7996704.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7996710.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7996706.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7996708.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7996716.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI7996718.1 | - |
| CAI7996720.1 | METHYLMALONYL-COA EPIMERASE |
| CAI7996722.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI7996724.1 | |
| CAI7996726.1 | |
| CAI7996728.1 | |
| CAI7996730.1 | HYDROLASE |
| CAI7996732.1 | |
| CAI7996734.1 | AMINOPEPTIDASE |
| CAI7996742.1 | |
| CAI7996744.1 | |
| CAI7996746.1 | |
| CAI7996748.1 | |
| CAI7996750.1 | |
| CAI7996752.1 | |
| CAI7996756.1 | MSF1/PX19 RELATED |
| CAI7996754.1 | MSF1/PX19 RELATED |
| CAI7996758.1 | RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE |
| CAI7996760.1 | |
| CAI7996768.1 | AMIDOHYDROLASE |
| CAI7996770.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI7996772.1 | |
| CAI7996774.1 | MONOACYLGLYCEROL LIPASE |
| CAI7996776.1 | NHL REPEAT-CONTAINING PROTEIN 2 |
| CAI7996778.1 | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA |
| CAI7996780.1 | SARCOSINE DEHYDROGENASE-RELATED |
| CAI7996782.1 | GLYCINE CLEAVAGE SYSTEM P-PROTEIN |
| CAI7996784.1 | GLYCINE CLEAVAGE SYSTEM P-PROTEIN |
| CAI7996786.1 | |
| CAI7996788.1 | GLYCINE DEHYDROGENASE, DECARBOXYLATING |
| CAI7996790.1 | - |
| CAI7996792.1 | DETHIOBIOTIN SYNTHETASE |
| CAI7996794.1 | DETHIOBIOTIN SYNTHETASE |
| CAI7996796.1 | |
| CAI7996805.1 | PLAKOPHILLIN-RELATED |
| CAI7996807.1 |
