Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7996132.1 | RHO GUANINE EXCHANGE FACTOR-RELATED |
| CAI7996140.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI7996142.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI7996144.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI7996150.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
| CAI7996148.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
| CAI7996146.1 | |
| CAI7996152.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
| CAI7996206.1 | IA-2 PROTEIN TYROSINE PHOSPHATASE, ISOFORM C |
| CAI7996208.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT J |
| CAI7996210.1 | |
| CAI7996218.1 | PROTEIN-TYROSINE-PHOSPHATASE |
| CAI7996222.1 | PROTEIN-TYROSINE-PHOSPHATASE |
| CAI7996214.1 | PROTEIN-TYROSINE-PHOSPHATASE |
| CAI7996216.1 | PROTEIN-TYROSINE-PHOSPHATASE |
| CAI7996212.1 | PROTEIN-TYROSINE-PHOSPHATASE |
| CAI7996220.1 | PROTEIN-TYROSINE-PHOSPHATASE |
| CAI7996224.1 | |
| CAI7996226.1 | |
| CAI7996230.1 | OCCLUDIN AND RNA POLYMERASE II ELONGATION FACTOR ELL |
| CAI7996228.1 | MESODERM DEVELOPMENT CANDIDATE 2 |
| CAI7996234.1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
| CAI7996232.1 | |
| CAI7996238.1 | 40S RIBOSOMAL PROTEIN S17 |
| CAI7996236.1 | 40S RIBOSOMAL PROTEIN S17 |
| CAI7996244.1 | DOWNSTREAM NEIGHBOR OF SON |
| CAI7996242.1 | DOWNSTREAM NEIGHBOR OF SON |
| CAI7996240.1 | |
| CAI7996246.1 | DOWNSTREAM NEIGHBOR OF SON |
| CAI7996248.1 | DOWNSTREAM NEIGHBOR OF SON |
| CAI7996250.1 | GLYCOSIDASE FAMILY 31 |
| CAI7996264.1 | ATP-DEPENDENT RNA HELICASE |
| CAI7996262.1 | ATP-DEPENDENT RNA HELICASE |
| CAI7996260.1 | ATP-DEPENDENT RNA HELICASE |
| CAI7996258.1 | ATP-DEPENDENT RNA HELICASE |
| CAI7996256.1 | ATP-DEPENDENT RNA HELICASE |
| CAI7996254.1 | ATP-DEPENDENT RNA HELICASE |
| CAI7996252.1 | |
| CAI7996270.1 | ATP-DEPENDENT RNA HELICASE |
| CAI7996272.1 | ATP-DEPENDENT RNA HELICASE |
| CAI7996266.1 | |
| CAI7996268.1 | |
| CAI7996274.1 | ATP-DEPENDENT RNA HELICASE |
| CAI7996276.1 | AHD DOMAIN-CONTAINING PROTEIN |
| CAI7996278.1 | LEUCINE-RICH REPEAT-CONTAINING |
| CAI7996280.1 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
| CAI7996282.1 | UNCHARACTERIZED |
| CAI7996286.1 | |
| CAI7996288.1 | |
| CAI7996284.1 |
