Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7995908.1 | |
| CAI7995906.1 | DNA-DIRECTED RNA POLYMERASE III |
| CAI7995912.1 | DNA-DIRECTED RNA POLYMERASE III |
| CAI7995918.1 | SERINE/THREONINE PROTEIN PHOSPHATASE |
| CAI7995914.1 | |
| CAI7995916.1 | |
| CAI7995920.1 | HISTONE H3 |
| CAI7995922.1 | CALCIUM RELEASE-ACTIVATED CALCIUM CHANNEL PROTEIN 1 |
| CAI7995924.1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 22 |
| CAI7995932.1 | MERLIN/MOESIN/EZRIN/RADIXIN |
| CAI7995930.1 | MERLIN/MOESIN/EZRIN/RADIXIN |
| CAI7995928.1 | MERLIN/MOESIN/EZRIN/RADIXIN |
| CAI7995926.1 | MERLIN/MOESIN/EZRIN/RADIXIN |
| CAI7995936.1 | MERLIN/MOESIN/EZRIN/RADIXIN |
| CAI7995934.1 | MERLIN/MOESIN/EZRIN/RADIXIN |
| CAI7995938.1 | MERLIN/MOESIN/EZRIN/RADIXIN |
| CAI7995940.1 | MERLIN/MOESIN/EZRIN/RADIXIN |
| CAI7995944.1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| CAI7995942.1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| CAI7995948.1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| CAI7995954.1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| CAI7995952.1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| CAI7995950.1 | PROTEIN MAX MYC-ASSOCIATED FACTOR X |
| CAI7995956.1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| CAI7995958.1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| CAI7995946.1 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| CAI7995960.1 | SLR1189 PROTEIN |
| CAI7995962.1 | MYOTUBULARIN-RELATED |
| CAI7995966.1 | VACUOLAR SORTING PROTEIN VPS29 |
| CAI7995964.1 | VACUOLAR SORTING PROTEIN VPS29 |
| CAI7995972.1 | INNER KINETOCHORE SUBUNIT MAL2 |
| CAI7995970.1 | INNER KINETOCHORE SUBUNIT MAL2 |
| CAI7995968.1 | INNER KINETOCHORE SUBUNIT MAL2 |
| CAI7995974.1 | DRAB5-RELATED |
| CAI7995976.1 | DRAB5-RELATED |
| CAI7995978.1 | FOIE GRAS |
| CAI7995980.1 | |
| CAI7995982.1 | |
| CAI7995996.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI7995994.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI7996002.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI7996000.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI7995998.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI7996004.1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
| CAI7996010.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7996008.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7996012.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7996014.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7996006.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI7996016.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
